Alternatives and similar repositories for combiSV:

Users that are interested in combiSV are comparing it to the libraries listed below

• mkirsche / Iris
  A module for improving the insertion sequences of structural variant calls
  ☆30Updated 3 years ago
• EichlerLab / svpop
  Variant annotation and merging pipeline
  ☆33Updated last month
• vgteam / sv-genotyping-paper
  ☆30Updated 5 years ago
• KolmogorovLab / hapdiff
  SV calling for diploid assemblies
  ☆27Updated last year
• clemgoub / rm2gff3
  Convert RepeatMasker ".out" file into a gff3 with colors!!!
  ☆21Updated 4 years ago
• WHops / NAHRwhals
  R package and wrapper functions for identifying serial structural variations from genome assemblies
  ☆29Updated 7 months ago
• Kirovez / pyTanFinder
  Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results
  ☆12Updated 6 years ago
• rlorigro / simple-dotplot
  Very simple and configurable all-in-one dotplot program
  ☆12Updated 2 years ago
• pangenome / HPRCyear1v2genbank
  building a human pangenome from the HPRCy1v2 genbank accessioned assemblies
  ☆14Updated 2 years ago
• mrvollger / NucFreq
  ☆36Updated last year
• tbenavi1 / KMC
  Fast and frugal disk based k-mer counter
  ☆14Updated 4 years ago
• schatzlab / pseudohaploid
  Create a pseudohaploid assembly from a partially resolved diploid assembly
  ☆32Updated 5 years ago
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 5 years ago
• AnimalGenomicsETH / bovine-graphs
  Integrate multiple genome assemblies into a pangenome graph
  ☆34Updated 2 years ago
• vgteam / giraffe-sv-paper
  ☆42Updated 11 months ago
• moold / paf2dotplot
  Draw a dot plot from a paf alignment
  ☆27Updated 3 weeks ago
• Xinglab / TideHunter
  TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain
  ☆20Updated 10 months ago
• esrice / hic-pipeline
  A pipeline for scaffolding a genome assembly using Hi-C
  ☆13Updated 2 years ago
• sanger-tol / yahs
  Yet another Hi-C scaffolding tool
  ☆19Updated 6 months ago
• vpc-ccg / sedef
  Identification of segmental duplications in the genome
  ☆27Updated 3 years ago
• dfguan / pin_hic
  A Hi-C scaffolding method
  ☆23Updated 3 years ago
• human-pangenomics / hprc-tutorials
  ☆17Updated last year
• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆46Updated 4 years ago
• farhangus / Sniffles2_plot
  ☆30Updated 8 months ago
• jmsong2 / GenomeSyn
  We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …
  ☆27Updated 3 years ago
• fritzsedlazeck / SVCollector
  Method to optimally select samples for validation and resequencing
  ☆27Updated 4 years ago
• amsession / Kmer-based-Subgenome-Mapping
  ☆20Updated 8 months ago
• ryought / hic_hiker
  HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C
  ☆26Updated 4 years ago
• tangerzhang / calc_switchErr
  ☆27Updated 3 weeks ago
• skoren / triobinningScripts
  Scripts to reproduce TrioBinning manuscript
  ☆17Updated 5 years ago