Combine structural variation outputs from long sequencing reads into a superior call set
☆18Aug 6, 2025Updated 9 months ago
Alternatives and similar repositories for combiSV
Users that are interested in combiSV are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Versatile simulator for structural variance and Nanopore/PacBio sequencing reads☆28Updated this week
- A python wrapper around SURVIVOR☆20Feb 15, 2024Updated 2 years ago
- VarIant SimulatOR for short, long and linked reads☆54Oct 21, 2024Updated last year
- Variant annotation and merging pipeline☆43Jul 22, 2025Updated 10 months ago
- ☆84Mar 3, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A module for improving the insertion sequences of structural variant calls☆33Jul 14, 2021Updated 4 years ago
- Toolkit for VNTR genotyping and repeat-pan genome graph construction☆33Aug 18, 2025Updated 9 months ago
- Structural variant caller for low-depth long-read sequencing data☆30Jan 6, 2025Updated last year
- Detect key Units in mosaic Tandem Repeats from representative reads from the same locus☆10Aug 2, 2023Updated 2 years ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆166Feb 26, 2025Updated last year
- SV genotyping with long reads☆40Jul 3, 2023Updated 2 years ago
- Tools for the analysis of structural variation in genomes☆81Feb 23, 2026Updated 3 months ago
- Haplotype-aware assembly of complex regions and small genomes☆15Updated this week
- Characterization of Structural Variation in Chinese samples☆18Dec 22, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Haplotype aware de novo assembly of diploid genome from long reads☆54Mar 16, 2022Updated 4 years ago
- FINSURF is a tool designed to analyse lists of sequences variants in the human genome.☆12Oct 24, 2022Updated 3 years ago
- SV caller for nanopore data☆92Jun 7, 2020Updated 5 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆49Jun 2, 2020Updated 5 years ago
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Sep 19, 2022Updated 3 years ago
- Methods to integrate data from multiple genome sequencing datasets and form consensus variant calls☆45Jan 26, 2022Updated 4 years ago
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 4 years ago
- Analysis and figure generation code for the ABRF NGS Phase II Study on DNA-seq reproducibility☆18Aug 5, 2021Updated 4 years ago
- ☆20Nov 17, 2025Updated 6 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Toolset for SV simulation, comparison and filtering☆417Dec 1, 2023Updated 2 years ago
- VCF files of SVs using long-read sequencing (LRS).☆22Dec 17, 2021Updated 4 years ago
- Scripts to do haplotype analysis on pan genomes.☆20Sep 24, 2020Updated 5 years ago
- An integrated computational framework for comprehensive transcriptome analyses with Nanopore direct-RNA sequencing data☆15May 17, 2025Updated last year
- Structural variant caller☆55Dec 8, 2021Updated 4 years ago
- DNN-based small variant caller☆12May 2, 2022Updated 4 years ago
- Method to optimally select samples for validation and resequencing☆30Apr 6, 2021Updated 5 years ago
- Topsicle utilizes abundance of telomere pattern k-mers to estimate telomere length in long read.☆20Mar 2, 2026Updated 2 months ago
- ☆17Jan 15, 2025Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Jasmine: SV Merging Across Samples☆252Dec 20, 2024Updated last year
- Structural variation caller using third generation sequencing☆654Updated this week
- Benchmarking variant calling in polyploids☆16Nov 26, 2021Updated 4 years ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Nov 18, 2025Updated 6 months ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆115Oct 25, 2021Updated 4 years ago
- HitSV: Maximizing discovery of structural variants across sequencing technologies☆25Apr 9, 2026Updated last month
- Calling deletions using deep convolutional neural☆25Feb 12, 2020Updated 6 years ago