ndierckx / combiSVLinks
Combine structural variation outputs from long sequencing reads into a superior call set
☆18Updated 5 months ago
Alternatives and similar repositories for combiSV
Users that are interested in combiSV are comparing it to the libraries listed below
Sorting:
- A module for improving the insertion sequences of structural variant calls☆33Updated 4 years ago
- SV calling for diploid assemblies☆30Updated last year
- ☆31Updated 6 years ago
- Variant annotation and merging pipeline☆41Updated 5 months ago
- ☆32Updated last year
- ☆44Updated last year
- Very simple and configurable all-in-one dotplot program☆14Updated 2 years ago
- Method to optimally select samples for validation and resequencing☆29Updated 4 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆28Updated last year
- Methylatino phasing using PacBio CCS reads☆13Updated last year
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Updated last year
- A method for measuring chromosome-specific telomere length from long reads☆22Updated last year
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 6 years ago
- ☆38Updated 3 months ago
- De novo tandem repeat calling from PacBio HiFi data☆19Updated last month
- ☆32Updated last year
- ☆16Updated 6 years ago
- ☆21Updated last week
- Yet another Hi-C scaffolding tool☆22Updated last year
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆15Updated 2 years ago
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Updated 3 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆21Updated last year
- Detect and phase minor SNVs from long-read sequencing data☆14Updated 4 years ago
- Scripts to reproduce TrioBinning manuscript☆17Updated 5 years ago
- Identification of conserved non-coding sequences in plants☆31Updated 3 months ago
- ☆51Updated last year
- Kmer Analysis of Pileups for Genotyping☆35Updated this week