Uauy-Lab / pangenome-haplotypesLinks
Scripts to do haplotype analysis on pan genomes.
☆21Updated 4 years ago
Alternatives and similar repositories for pangenome-haplotypes
Users that are interested in pangenome-haplotypes are comparing it to the libraries listed below
Sorting:
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆17Updated 6 years ago
- ☆15Updated 3 years ago
- SINE annotation tool for plant genomes☆17Updated last year
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆17Updated 2 years ago
- B73Ab10 genome assembly methods☆16Updated 3 years ago
- Study of TE evolution in a population of genomes☆9Updated last year
- A Hi-C scaffolding method☆23Updated 3 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 3 months ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆20Updated 8 months ago
- Construct and Analyze the North American Vitis pangenome☆23Updated last year
- Identification of conserved non-coding sequences in plants☆20Updated last month
- Genome alignment and synteny plots☆30Updated 2 years ago
- ☆16Updated 2 years ago
- ☆15Updated last year
- Scripts used to perform analyses in Rice et al. (2023)☆15Updated last year
- ☆15Updated 5 years ago
- parallelLastz: Running Lastz in parallel☆16Updated 9 months ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆17Updated 3 weeks ago
- Set of script for the paper on the cattle graph genome☆13Updated 2 years ago
- plot genome alignment synteny☆21Updated 5 years ago
- ☆12Updated 4 years ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Updated 6 years ago
- ☆15Updated 4 years ago
- ☆15Updated last year
- ☆16Updated 6 months ago
- Yet another Hi-C scaffolding tool☆20Updated 8 months ago
- Long Read Based SV Calling Tools Analysis☆14Updated last year
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆13Updated 5 years ago
- ☆14Updated 3 years ago