rivasiker / trailsLinks
Tree reconstruction of ancestry using incomplete lineage sorting
☆11Updated last month
Alternatives and similar repositories for trails
Users that are interested in trails are comparing it to the libraries listed below
Sorting:
- Homologizer: phasing gene copies into polyploid subgenomes☆11Updated last week
- ☆15Updated 2 years ago
- ☆12Updated 2 years ago
- parallelLastz: Running Lastz in parallel☆17Updated last year
- ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…☆20Updated 3 weeks ago
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Updated 9 months ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 11 months ago
- ☆12Updated 5 years ago
- HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.☆11Updated last year
- Fast and flexible inference of the distribution of fitness effects (DFE), VCF-SFS parsing with ancestral allele and site-degeneracy annot …☆18Updated last week
- ☆13Updated 5 months ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆22Updated 5 months ago
- Wrapper for short and long read mapping, creation of quality report(s) and estimation of genome size☆12Updated 4 months ago
- ☆16Updated 2 months ago
- COsine SImilarity-based Genotyper using pangenomes☆25Updated 2 weeks ago
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆15Updated last year
- A Hi-C scaffolding method☆22Updated 4 years ago
- This tool performs an automatic identification, annotation, and analysis of the MYB gene family in plants. It can be applied to new trans…☆20Updated 4 months ago
- Scripts used to perform analyses in Rice et al. (2023)☆16Updated 2 years ago
- ☆16Updated 2 years ago
- A software for gap filling in genome assemblies☆10Updated 3 years ago
- The MafFilter genome alignment processor☆19Updated last month
- chloroplast genome assembly using long reads data☆14Updated 7 months ago
- Improved long-read assembly by preserving contained reads☆30Updated last year
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆27Updated 4 months ago
- Diploid genome assembly analysis tools☆14Updated last year
- Set of script for the paper on the cattle graph genome☆13Updated 3 years ago
- Decomposition Into Single-COpy gene trees (DISCO) is a method for decomposing multi-copy gene-family trees while attempting to preserve o…☆10Updated 7 months ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Updated 7 years ago
- Some components that speed up and reduce resource cost for original ALLHiC☆14Updated 7 months ago