Parsoa / SVDSSLinks
Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)
☆47Updated 4 months ago
Alternatives and similar repositories for SVDSS
Users that are interested in SVDSS are comparing it to the libraries listed below
Sorting:
- Kmer Analysis of Pileups for Genotyping☆35Updated this week
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆53Updated 10 months ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆52Updated 10 months ago
- ☆21Updated 2 weeks ago
- Tumour-only somatic mutation calling using long reads☆28Updated last year
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆38Updated 8 months ago
- Easy genomic regions for short-read variant calling☆45Updated 4 months ago
- ☆19Updated last year
- A module for improving the insertion sequences of structural variant calls☆33Updated 4 years ago
- Joint structural variant and copy number variant caller for HiFi sequencing data☆69Updated 2 months ago
- Efficient low-divergence mapping of long reads in minimizer space☆70Updated 2 years ago
- Correcting errors in noisy long reads using variation graphs☆50Updated 3 years ago
- A battery of methylation tools for PacBio HiFi reads☆47Updated last month
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- Method to optimally select samples for validation and resequencing☆30Updated 4 years ago
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- Targeted genotyper for complex polymorphic genes☆31Updated this week
- Phased structural variant discovery in pangenomes☆39Updated last month
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆59Updated 4 months ago
- ☆84Updated 10 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Updated last year
- Variant annotation and merging pipeline☆41Updated 6 months ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆51Updated 6 years ago
- ☆51Updated last year
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Updated 3 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆30Updated 2 years ago
- VNTR annotation using motif selection☆39Updated last month