SexGenomicsToolkit / PSASSLinks
Pooled Sequencing Analysis for Sex Signal
☆11Updated 4 years ago
Alternatives and similar repositories for PSASS
Users that are interested in PSASS are comparing it to the libraries listed below
Sorting:
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- ☆40Updated 2 years ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆34Updated 11 months ago
- Analyses of sex chromosome evolution in songbirds☆16Updated 6 years ago
- ☆30Updated 8 months ago
- Centromics: visualing centromeres with multiple omics data☆24Updated 6 months ago
- An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes☆39Updated 3 months ago
- A personal pipeline to calculate Ka,Ks and Ka/Ks using PAML-yn00 with YN method☆10Updated 6 months ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆32Updated 7 months ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- ☆12Updated 6 years ago
- ☆17Updated 3 years ago
- ☆31Updated 6 months ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆32Updated 8 months ago
- ☆21Updated last year
- scripts for the project of seven thaliana genomes assembly☆41Updated 4 years ago
- HELIANO is a software for detection and classification of Helitron-like elements.☆30Updated 3 months ago
- Centromics: visualing centromeres with multiple omics data☆20Updated last year
- A tool for quick and accurate calculation of syntenic diversity.☆42Updated this week
- use long sequenced reads to close gaps in assemblies☆39Updated 7 years ago
- A shiny application to visualize MCscan result☆37Updated 2 years ago
- A genome assembly assessment pipeline.☆37Updated last year
- ☆24Updated last year
- Draw a dot plot from a paf alignment☆34Updated last month
- Automated pipeline for running CoalHMM☆13Updated last year
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆50Updated last month
- Toolkit for evolutionary analyses of linkage groups☆32Updated last year
- R package to draw syntenic plots in 3 different styles☆42Updated 3 weeks ago
- HiCAT new project☆29Updated 4 months ago
- Scripts that used in our chicken T2T manuscript.☆21Updated 2 years ago