swu1019lab / haplotLinks
An easy-to-use python package can be used for genomic visual analysis
☆21Updated last year
Alternatives and similar repositories for haplot
Users that are interested in haplot are comparing it to the libraries listed below
Sorting:
- A tool for performing collinearity-incorporating homology inference☆33Updated 2 years ago
- ☆41Updated 2 years ago
- a Semi-automated pipeline for assembling T2T genome☆25Updated 3 months ago
- A genome assembly assessment pipeline.☆37Updated 2 years ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆34Updated 3 months ago
- ☆32Updated last year
- ☆44Updated 6 months ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆37Updated last year
- Plant genome assembly and annotation pipeline using snakemake☆52Updated 8 months ago
- An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes☆44Updated 4 months ago
- Dynamic Elongation of a Genome Assembly Path☆25Updated last month
- Centromics: visualing centromeres with multiple omics data☆25Updated 11 months ago
- Draw a dot plot from a paf alignment☆38Updated 4 months ago
- ☆28Updated 3 years ago
- ☆29Updated 3 years ago
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆43Updated 3 weeks ago
- ☆31Updated 10 months ago
- C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on Pore-C, HiFi-C/CiFi or Hi-C.☆85Updated 2 weeks ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 3 years ago
- ☆15Updated 3 years ago
- This is a method to find telomeres and centromeres in plants.☆42Updated 2 years ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆68Updated 4 years ago
- Automated pipeline for running CoalHMM☆13Updated 3 weeks ago
- A KMER-based genome-wIde Assocation testing approach on polyploids☆41Updated 3 weeks ago
- BITACORA: A Bioinformatics tool for gene family annotation☆53Updated last month
- ☆26Updated last week
- A pipeline for genomic variant detection with genome assemblies at population scale☆36Updated 8 months ago
- HiCAT new project☆31Updated 8 months ago
- HELIANO is a software for detection and classification of Helitron-like elements.☆32Updated 7 months ago
- ☆33Updated 10 months ago