WarrenLab / hic-scaffolding-nfLinks
Nextflow pipeline for scaffolding genome assemblies with Hi-C reads
☆14Updated 6 months ago
Alternatives and similar repositories for hic-scaffolding-nf
Users that are interested in hic-scaffolding-nf are comparing it to the libraries listed below
Sorting:
- ☆28Updated last year
- ☆37Updated last year
- ☆41Updated 2 years ago
- A genome assembly assessment pipeline.☆37Updated last year
- Draw a dot plot from a paf alignment☆30Updated 3 months ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆27Updated 3 years ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- This is a method to find telomeres and centromeres in plants.☆41Updated 2 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- ☆42Updated last year
- ☆30Updated 6 months ago
- Genome Annotation Pipeline☆36Updated 10 months ago
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆27Updated 4 years ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆35Updated 2 years ago
- A shiny application to visualize MCscan result☆37Updated 2 years ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆30Updated 5 months ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- ☆27Updated 3 months ago
- Plant genome assembly and annotation pipeline using snakemake☆44Updated 2 months ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Centromics: visualing centromeres with multiple omics data☆23Updated 4 months ago
- Likelihood-based Selective Sweep Detection☆39Updated last year
- Add multiple thread function for genome comparison☆15Updated 3 years ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆21Updated 4 years ago
- ☆40Updated 2 months ago
- A pipeline for scaffolding a genome assembly using Hi-C☆13Updated 2 years ago
- HiCAT new project☆28Updated 2 months ago
- ☆30Updated 4 months ago
- use long sequenced reads to close gaps in assemblies☆37Updated 6 years ago
- ☆30Updated 5 years ago