WarrenLab / hic-scaffolding-nf
Nextflow pipeline for scaffolding genome assemblies with Hi-C reads
☆14Updated last month
Alternatives and similar repositories for hic-scaffolding-nf:
Users that are interested in hic-scaffolding-nf are comparing it to the libraries listed below
- ☆27Updated last year
- ☆35Updated 10 months ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆25Updated 3 years ago
- Mabs, a genome assembly tool which optimizes parameters of Hifiasm and Flye☆29Updated last month
- Plant genome assembly and annotation pipeline using snakemake☆37Updated last year
- A genome assembly assessment pipeline.☆37Updated last year
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆26Updated 3 years ago
- ☆37Updated last year
- Dynamic Elongation of a Genome Assembly Path☆20Updated 8 months ago
- Centromics: visualing centromeres with multiple omics data☆22Updated 2 months ago
- Draw a dot plot from a paf alignment☆25Updated last month
- ☆25Updated 3 years ago
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆12Updated 5 years ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆35Updated last year
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 6 years ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆13Updated 4 years ago
- Toolkit for evolutionary analyses of linkage groups☆26Updated 6 months ago
- A pipeline for scaffolding a genome assembly using Hi-C☆12Updated 2 years ago
- A box of genomics tools☆21Updated 4 years ago
- Fast and frugal disk based k-mer counter☆13Updated 3 years ago
- Centromics: visualing centromeres with multiple omics data☆17Updated last year
- Reconstruction of ancestral genome maps☆16Updated 6 years ago
- ☆28Updated 8 months ago
- ☆16Updated 3 months ago
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- ☆19Updated 2 years ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆23Updated this week
- ☆23Updated last year
- ☆42Updated 8 months ago