WarrenLab / hic-scaffolding-nfLinks
Nextflow pipeline for scaffolding genome assemblies with Hi-C reads
☆16Updated 2 months ago
Alternatives and similar repositories for hic-scaffolding-nf
Users that are interested in hic-scaffolding-nf are comparing it to the libraries listed below
Sorting:
- ☆29Updated 2 weeks ago
- A shiny application to visualize MCscan result☆38Updated 3 years ago
- ☆44Updated last year
- HELIANO is a software for detection and classification of Helitron-like elements.☆32Updated 7 months ago
- ☆32Updated last year
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆36Updated 3 years ago
- MITE Tracker: An accurate approach to identify miniature inverted-repeat transposable elements in large genomes☆20Updated last year
- Pan-genome Construction and Population Structure Variation Calling pipeline☆45Updated last year
- A genome assembly assessment pipeline.☆37Updated 2 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆31Updated 4 years ago
- ☆38Updated 3 months ago
- ☆31Updated 9 months ago
- Dynamic Elongation of a Genome Assembly Path☆25Updated last month
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆13Updated 6 years ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 3 years ago
- This is a method to find telomeres and centromeres in plants.☆42Updated 2 years ago
- Draw a dot plot from a paf alignment☆37Updated 4 months ago
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆28Updated 4 years ago
- Integrate multiple genome assemblies into a pangenome graph☆35Updated 3 years ago
- HiCAT new project☆31Updated 8 months ago
- ☆21Updated last year
- A pipeline for genomic variant detection with genome assemblies at population scale☆36Updated 7 months ago
- Centromics: visualing centromeres with multiple omics data☆25Updated 10 months ago
- Likelihood-based Selective Sweep Detection☆40Updated 2 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆50Updated 2 months ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 6 years ago
- ☆44Updated 6 months ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆37Updated last year
- Fast and frugal disk based k-mer counter☆14Updated 4 years ago
- a Semi-automated pipeline for assembling T2T genome☆25Updated 3 months ago