XuepengSun / apple_diploid_genomes
☆10Updated 4 years ago
Alternatives and similar repositories for apple_diploid_genomes:
Users that are interested in apple_diploid_genomes are comparing it to the libraries listed below
- A program to generate a graph which presents a simplified representation of several full length genomes☆12Updated 6 years ago
- Simple tools for working with Hi-C data☆17Updated 6 years ago
- Pipeline for genome scaffolding by modelling distributions of HiC pairs☆10Updated 2 years ago
- SINE annotation tool for plant genomes☆17Updated last year
- T2Tools is a toolset contains several tools for plant T2T assembly, and it is under development.☆11Updated 6 months ago
- Scripts to do haplotype analysis on pan genomes.☆21Updated 4 years ago
- Identification of conserved non-coding sequences in plants☆16Updated 3 months ago
- ☆15Updated 3 years ago
- ☆12Updated 4 years ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Updated last year
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Updated 8 years ago
- parallelLastz: Running Lastz in parallel☆15Updated 6 months ago
- A viewer for multiple alignment format (MAF) files in JBrowse 2☆12Updated last month
- ☆13Updated 9 months ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆20Updated 5 months ago
- Phasing reads with secondary alignments☆17Updated 4 months ago
- Prefix-renaming FASTA records really fast.☆17Updated 9 months ago
- defusion☆14Updated 3 years ago
- A reliable gap filling pipeline for draft genomes☆11Updated 5 years ago
- De-novo Assembly Structural Variant Caller☆13Updated 8 years ago
- Homologizer: phasing gene copies into polyploid subgenomes☆10Updated 2 years ago
- ☆16Updated 3 years ago
- pangenome analyses for complete genomes of great apes (and gibbon)☆17Updated 5 months ago
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆13Updated 11 months ago
- A Hi-C scaffolding method☆23Updated 3 years ago
- Set of script for the paper on the cattle graph genome☆13Updated 2 years ago
- Some components that speed up and reduce resource cost for original ALLHiC☆13Updated 2 weeks ago
- Construct and Analyze the North American Vitis pangenome☆22Updated last year
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Consensus genome annotation using OMA☆22Updated 3 months ago