XuepengSun / apple_diploid_genomesLinks
☆10Updated 5 years ago
Alternatives and similar repositories for apple_diploid_genomes
Users that are interested in apple_diploid_genomes are comparing it to the libraries listed below
Sorting:
- Scripts to do haplotype analysis on pan genomes.☆20Updated 5 years ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Updated 7 years ago
- Simple tools for working with Hi-C data☆18Updated 7 years ago
- ☆15Updated 3 years ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆22Updated 4 months ago
- Set of script for the paper on the cattle graph genome☆13Updated 3 years ago
- ☆12Updated 5 years ago
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Updated 8 years ago
- SINE annotation tool for plant genomes☆18Updated last year
- Characterization of Structural Variation in Chinese samples☆18Updated 4 years ago
- ☆13Updated 7 months ago
- parallelLastz: Running Lastz in parallel☆17Updated last year
- defusion☆14Updated 4 years ago
- ☆16Updated 4 years ago
- A nextflow pipeline for polishing CLR assemblies☆18Updated 2 years ago
- A filter algorithm with program to filter an alignment or mapping file☆12Updated 7 months ago
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆15Updated 3 months ago
- ☆15Updated 2 years ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Updated 2 months ago
- Map TIR-pHMM models to genomic sequences for annotation of MITES and complete DNA-Transposons.☆10Updated 5 months ago
- ☆12Updated last year
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Updated 4 years ago
- Genome Assembly 102☆17Updated 8 months ago
- Nucmer from Mummer3 followed by ggplot for nicer and more customisable genome alignment plots.☆11Updated 4 years ago
- Phasing reads with secondary alignments☆21Updated last year
- Homologizer: phasing gene copies into polyploid subgenomes☆11Updated 3 years ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Updated 2 years ago
- Long Read Based SV Calling Tools Analysis☆14Updated last year
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆19Updated 2 years ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Updated last month