Robust Eukaryotic Annotation Toolkit
☆17Feb 28, 2025Updated last year
Alternatives and similar repositories for reat
Users that are interested in reat are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated last year
- ☆16Apr 16, 2026Updated last month
- Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to s…☆112Jan 30, 2026Updated 4 months ago
- Tool for globally phasing diploid assembly graphs with orthogonal data☆43Nov 25, 2024Updated last year
- SINE annotation tool for plant genomes☆19Jan 21, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- HiFi error modeler and simulator with ploidy☆12Feb 12, 2026Updated 3 months ago
- The tools are used for displaying hic signal of genome☆26Jan 4, 2021Updated 5 years ago
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- Genome annotation pre-publication results☆33Updated this week
- Same species annotation lift over pipeline.☆99Jul 21, 2023Updated 2 years ago
- ☆16Apr 3, 2023Updated 3 years ago
- ☆29Jul 16, 2022Updated 3 years ago
- Repeat-aware polishing genomes assembled using HiFi long reads☆103Apr 7, 2026Updated 2 months ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆14Apr 28, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A viewer for multiple alignment format (MAF) files in JBrowse 2☆14Jun 3, 2026Updated last week
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆37Apr 23, 2025Updated last year
- An ultra-fast gzip file tools☆27Apr 25, 2024Updated 2 years ago
- ☆42May 19, 2025Updated last year
- Draw a dot plot from a paf alignment☆42May 9, 2026Updated last month
- base-level dotplots from PAF alignments☆34Sep 18, 2025Updated 8 months ago
- An ultra-fast and efficient tool for high frequency kmer sequencing reads extraction☆19Mar 6, 2024Updated 2 years ago
- ☆32Mar 3, 2026Updated 3 months ago
- ☆44Dec 29, 2025Updated 5 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆79Aug 30, 2016Updated 9 years ago
- ☆32Jan 3, 2025Updated last year
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆88Dec 3, 2025Updated 6 months ago
- An easy-to-use python package can be used for genomic visual analysis☆22Apr 20, 2024Updated 2 years ago
- EndHic is a fast and easy-to-use Hi-C scaffolding tool, using the Hi-C links from contig end regions instead of whole contig regions to a…☆26Mar 11, 2023Updated 3 years ago
- An algorithm for centromere assembly using long error-prone reads☆25May 25, 2021Updated 5 years ago
- BOSTIn is a new, user-friendly phylogenetic artifact identification package.☆11May 13, 2026Updated 3 weeks ago
- ☆13Sep 11, 2025Updated 9 months ago
- Tool (experimental) to compute layout from overlaps with spectral algorithm☆11Nov 28, 2017Updated 8 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Dynamic Elongation of a Genome Assembly Path☆25Apr 29, 2026Updated last month
- ☆26Apr 22, 2025Updated last year
- ☆26Mar 23, 2024Updated 2 years ago
- ☆13May 27, 2025Updated last year
- Variant Calling for the HPRC2☆16May 26, 2026Updated 2 weeks ago
- ☆12Jun 7, 2024Updated 2 years ago
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Feb 28, 2017Updated 9 years ago