Robust Eukaryotic Annotation Toolkit
☆17Feb 28, 2025Updated last year
Alternatives and similar repositories for reat
Users that are interested in reat are comparing it to the libraries listed below
Sorting:
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated 9 months ago
- ☆16Dec 25, 2024Updated last year
- Tool for globally phasing diploid assembly graphs with orthogonal data☆43Nov 25, 2024Updated last year
- Genome annotation pre-publication results☆25Updated this week
- SINE annotation tool for plant genomes☆18Jan 21, 2024Updated 2 years ago
- The tools are used for displaying hic signal of genome☆24Jan 4, 2021Updated 5 years ago
- Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to s…☆108Jan 30, 2026Updated last month
- HiFi error modeler and simulator with ploidy☆11Feb 12, 2026Updated 2 weeks ago
- Same species annotation lift over pipeline.☆97Jul 21, 2023Updated 2 years ago
- A viewer for multiple alignment format (MAF) files in JBrowse 2☆14Jan 31, 2026Updated last month
- ☆16Apr 3, 2023Updated 2 years ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆14Apr 28, 2020Updated 5 years ago
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- ☆29Jul 16, 2022Updated 3 years ago
- Repeat-aware polishing genomes assembled using HiFi long reads☆98Nov 12, 2025Updated 3 months ago
- An ultra-fast and efficient tool for high frequency kmer sequencing reads extraction☆19Mar 6, 2024Updated last year
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Apr 23, 2025Updated 10 months ago
- An ultra-fast gzip file tools☆27Apr 25, 2024Updated last year
- Draw a dot plot from a paf alignment☆38Sep 18, 2025Updated 5 months ago
- ☆32Jan 3, 2025Updated last year
- ☆13May 27, 2025Updated 9 months ago
- An easy-to-use python package can be used for genomic visual analysis☆21Apr 20, 2024Updated last year
- ☆38Dec 29, 2025Updated 2 months ago
- Dynamic Elongation of a Genome Assembly Path☆25Updated this week
- ☆24Apr 22, 2025Updated 10 months ago
- Inferring natural selection by comparative population genomic analysis across species☆26Oct 31, 2023Updated 2 years ago
- This is the standalone version of the EviAnn pipeline☆139Feb 5, 2026Updated 3 weeks ago
- ☆41May 19, 2025Updated 9 months ago
- a software for annotating plant genes☆23Dec 22, 2023Updated 2 years ago
- An algorithm for centromere assembly using long error-prone reads☆25May 25, 2021Updated 4 years ago
- ☆26Mar 23, 2024Updated last year
- ☆21Sep 12, 2019Updated 6 years ago
- ☆86Jul 12, 2024Updated last year
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆60Oct 27, 2023Updated 2 years ago
- base-level dotplots from PAF alignments☆32Sep 18, 2025Updated 5 months ago
- ☆28Oct 20, 2023Updated 2 years ago
- EndHic is a fast and easy-to-use Hi-C scaffolding tool, using the Hi-C links from contig end regions instead of whole contig regions to a…☆25Mar 11, 2023Updated 2 years ago
- A Hi-C scaffolding method☆22Dec 22, 2021Updated 4 years ago
- BOSTIn is a new, user-friendly phylogenetic artifact identification package.☆11Jan 20, 2026Updated last month