glogsdon1 / sunk-based_assembly
☆15Updated 4 years ago
Alternatives and similar repositories for sunk-based_assembly:
Users that are interested in sunk-based_assembly are comparing it to the libraries listed below
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Updated 8 years ago
- Scripts used to perform analyses in Rice et al. (2023)☆15Updated last year
- A Hi-C scaffolding method☆23Updated 3 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Set of script for the paper on the cattle graph genome☆13Updated 2 years ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆20Updated 7 months ago
- B73Ab10 genome assembly methods☆16Updated 3 years ago
- Construct and Analyze the North American Vitis pangenome☆23Updated last year
- Very simple and configurable all-in-one dotplot program☆12Updated 2 years ago
- ☆15Updated 5 years ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆12Updated 6 years ago
- Simple tools for working with Hi-C data☆17Updated 6 years ago
- SINE annotation tool for plant genomes☆17Updated last year
- Phasing reads with secondary alignments☆18Updated 5 months ago
- Scripts to do haplotype analysis on pan genomes.☆21Updated 4 years ago
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆17Updated 2 years ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆13Updated 5 years ago
- ☆12Updated 4 years ago
- ☆15Updated 4 months ago
- A pipeline for scaffolding a genome assembly using Hi-C☆13Updated 2 years ago
- The MafFilter genome alignment processor☆18Updated last month
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆21Updated 4 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 10 months ago
- Long Read Based SV Calling Tools Analysis☆13Updated last year
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 2 months ago
- ☆15Updated 3 years ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 3 years ago
- ☆30Updated 5 years ago
- Characterization of Structural Variation in Chinese samples☆18Updated 3 years ago
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆16Updated 5 years ago