☆16Apr 9, 2021Updated 5 years ago
Alternatives and similar repositories for sunk-based_assembly
Users that are interested in sunk-based_assembly are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆15Feb 20, 2023Updated 3 years ago
- Experimental String Graph construction and processing☆26Aug 14, 2023Updated 2 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆49Feb 23, 2021Updated 5 years ago
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Feb 28, 2017Updated 9 years ago
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- ☆18Apr 28, 2026Updated 3 weeks ago
- Scripts used to perform analyses in Rice et al. (2023)☆16Dec 28, 2023Updated 2 years ago
- bash script to search for centromeric repeat patterns in PacBio data, using several current tools (trf and R)☆13Dec 1, 2016Updated 9 years ago
- The complete sequence of a Chinese individual☆12Oct 8, 2024Updated last year
- Set of script for the paper on the cattle graph genome☆14Jan 10, 2023Updated 3 years ago
- Extracting paths from assembly graphs☆24Apr 26, 2024Updated 2 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆37Sep 17, 2022Updated 3 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Downstream Analysis☆20Apr 10, 2026Updated last month
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- DNA序列比对结果 可视化展示工具☆47Oct 10, 2021Updated 4 years ago
- CHM13 human reference genome issue tracking☆20Jan 18, 2024Updated 2 years ago
- ☆15Aug 22, 2023Updated 2 years ago
- ☆39Feb 22, 2023Updated 3 years ago
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- Long-reads Gap-free Chromosome-scale Assembler☆79Mar 21, 2023Updated 3 years ago
- An algorithm for centromere assembly using long error-prone reads☆25May 25, 2021Updated 4 years ago
- SRF: Satellite Repeat Finder☆103Jan 8, 2024Updated 2 years ago
- Post-verkko graph and assembly curation in Python.☆18Apr 28, 2026Updated 3 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- The pipelines were built in the project resolving the genome of a diploid potato. Most of the scripts were sepcially designed to perform …☆24Jul 4, 2023Updated 2 years ago
- ☆42Dec 29, 2025Updated 4 months ago
- ☆62Sep 15, 2025Updated 8 months ago
- Genome Pair Rapid Dotter☆68Sep 2, 2021Updated 4 years ago
- End-guided RNA assembler☆15Dec 2, 2025Updated 5 months ago
- Make colorful identity heatmaps of genomic sequence☆134May 24, 2024Updated last year
- Some useful bioinformatics pipelines for genomics analysis☆14May 25, 2021Updated 4 years ago
- Detecting DNA methylation from PacBio CCS reads☆84Apr 8, 2025Updated last year
- Code repository for the T2T-Y paper☆24Jul 11, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Phasing reads with secondary alignments☆22Nov 30, 2024Updated last year
- Improved Phased Assembler☆28Mar 11, 2022Updated 4 years ago
- OpenGL Powered Pretext Contact Map Viewer☆61Apr 27, 2026Updated 3 weeks ago
- Whole Genome Annotation Pipeline☆16Jun 20, 2025Updated 11 months ago
- A tool for evaluate long-read de novo assembly results☆50Aug 28, 2024Updated last year
- Segmental Duplication Assembler (SDA).☆43May 7, 2023Updated 3 years ago
- Characterization of Structural Variation in Chinese samples☆18Dec 22, 2021Updated 4 years ago