Alternatives and similar repositories for Genome2OR

Users that are interested in Genome2OR are comparing it to the libraries listed below

• YaoZhou89 / WGSc
  ☆15Updated 3 years ago
• sc-zhang / T2Tools
  T2Tools is a toolset contains several tools for T2T assembly, and it is under development.
  ☆15Updated last month
• wangziwei08 / LTR-insertion-time-estimation
  ☆16Updated 2 years ago
• phasegenomics / matlock
  Simple tools for working with Hi-C data
  ☆18Updated 6 years ago
• csh3 / RegCloser
  RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…
  ☆15Updated last year
• sc-zhang / ALLHiC_extensions
  Some components that speed up and reduce resource cost for original ALLHiC
  ☆14Updated 3 months ago
• legumeinfo / pandagma
  Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.
  ☆17Updated 2 months ago
• Wenfei-Xian / TIPP
  Telomere local assembly, Improved whole genome polish, and Plastid assembly
  ☆21Updated 5 months ago
• yangli557 / AnnoSINE
  SINE annotation tool for plant genomes
  ☆18Updated last year
• jnarayan81 / parallelLastz
  parallelLastz: Running Lastz in parallel
  ☆17Updated last year
• lkiko / famCircle
  ☆14Updated 2 months ago
• Atvar2 / plotHicGenome
  The tools are used for displaying hic signal of genome
  ☆24Updated 4 years ago
• HuiyangYu / HFKReads
  An ultra-fast and efficient tool for high frequency kmer sequencing reads extraction
  ☆19Updated last year
• shingocat / syntenyPlotByR
  plot genome alignment synteny
  ☆21Updated 5 years ago
• esrice / PBJelly
  a fork of the gap-closing pipeline PBJelly
  ☆15Updated 6 years ago
• yilinZhang-bio / Watermelon-pangenome
  ☆24Updated 2 years ago
• ChenHuaLab / CEGA
  Inferring natural selection by comparative population genomic analysis across species
  ☆25Updated last year
• yiliao1022 / SVGAP
  A pipeline for genomic variant detection with genome assemblies at population scale
  ☆29Updated 4 months ago
• gao-lab / LOST_and_FOUND
  ☆13Updated 2 years ago
• yiliao1022 / TADEvoDrosophila
  Code for TAD_SV project
  ☆11Updated 3 years ago
• xiekunwhy / kmerDedup
  Reduce genome assembly redundancy using shared mapped k-mer method.
  ☆15Updated 5 months ago
• linguoliang / puzzle-hi-c
  ☆17Updated 9 months ago
• Uauy-Lab / pangenome-haplotypes
  Scripts to do haplotype analysis on pan genomes.
  ☆21Updated 5 years ago
• lardo / khaper
  ☆28Updated 3 years ago
• Bean061 / ptgaul
  chloroplast genome assembly using long reads data
  ☆13Updated 3 months ago
• isugifNF / polishCLR
  A nextflow pipeline for polishing CLR assemblies
  ☆18Updated 2 years ago
• bpucker / MybMonday
  MYB transcription factors are one of the largest gene family in plants and control many processes. This repository provides additional ba…
  ☆12Updated 3 months ago
• WarrenLab / chicken-pangenome-paper
  Scripts used to perform analyses in Rice et al. (2023)
  ☆15Updated last year
• simonhmartin / asynt
  Genome alignment and synteny plots
  ☆32Updated 2 years ago
• noecochetel / North_American_Vitis_Pangenome
  Construct and Analyze the North American Vitis pangenome
  ☆25Updated 2 months ago