liu3zhenlab / homotools
☆27Updated 3 months ago
Alternatives and similar repositories for homotools:
Users that are interested in homotools are comparing it to the libraries listed below
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆25Updated 3 years ago
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- ☆24Updated 2 years ago
- Computational Analysis of Gene Expression Evolution☆40Updated this week
- ☆42Updated 11 months ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆24Updated 3 weeks ago
- scripts to parse and analyse MCScanX collinearity output☆31Updated 5 years ago
- Yet another Hi-C scaffolding tool☆19Updated 5 months ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- ☆27Updated last year
- ☆21Updated 5 years ago
- Integrate multiple genome assemblies into a pangenome graph☆34Updated 2 years ago
- A shiny application to visualize MCscan result☆36Updated 2 years ago
- read and analyse RepeatMasker output☆24Updated last year
- ☆32Updated 5 months ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago
- Guide through code for a Minimmap2 genome alignment and a seq-seq-pan pan-genome alignment with visualizations in R. The tutorial present…☆17Updated last year
- ☆20Updated 8 months ago
- Dynamic Elongation of a Genome Assembly Path☆21Updated 11 months ago
- Calculate circos format data of GC content and GC skew from genome data.☆11Updated 10 years ago
- R package to draw syntenic plots in 3 different styles☆40Updated last year
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆16Updated last year
- Plant genome assembly and annotation pipeline using snakemake☆43Updated last year
- ☆29Updated 7 months ago
- A box of genomics tools☆21Updated 4 years ago
- A tool for performing collinearity-incorporating homology inference☆29Updated last year
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Chromosome-level synteny plotting using orthologous regions☆29Updated 6 months ago
- Hapmap-v1☆11Updated 5 years ago
- Resources for the Col-CEN reference genome assemblies☆11Updated 3 years ago