liu3zhenlab / homotools
☆22Updated 3 weeks ago
Related projects ⓘ
Alternatives and complementary repositories for homotools
- Plant genome assembly and annotation pipeline using snakemake☆35Updated last year
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆23Updated 2 years ago
- This tool performs an automatic identification, annotation, and analysis of the MYB gene family in plants. It can be applied to new trans…☆17Updated 3 months ago
- Scripts to do haplotype analysis on pan genomes.☆21Updated 4 years ago
- scripts to parse and analyse MCScanX collinearity output☆29Updated 4 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 6 years ago
- Genome alignment and synteny plots☆27Updated last year
- ☆21Updated 2 months ago
- ☆40Updated 6 months ago
- A Hi-C scaffolding method☆22Updated 2 years ago
- Likelihood-based Selective Sweep Detection☆35Updated last year
- ☆23Updated 9 months ago
- Yet another Hi-C scaffolding tool☆19Updated 2 weeks ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆33Updated last month
- assembly evaluation tool☆34Updated 2 years ago
- ☆16Updated last month
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆26Updated 3 years ago
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆17Updated 2 years ago
- A pipeline for scaffolding a genome assembly using Hi-C☆12Updated last year
- ☆31Updated 4 years ago
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆16Updated 5 years ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆20Updated last month
- Guide through code for a Minimmap2 genome alignment and a seq-seq-pan pan-genome alignment with visualizations in R. The tutorial present…☆15Updated last year
- ☆16Updated 2 years ago
- ☆21Updated last year
- Fast and frugal disk based k-mer counter☆13Updated 3 years ago
- A tool for recovering synteny blocks from multiple alignment☆29Updated 3 years ago
- ☆20Updated last year
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆12Updated 4 years ago
- R package to draw syntenic plots in 3 different styles☆39Updated 11 months ago