chfi / pafviewLinks
☆17Updated 7 months ago
Alternatives and similar repositories for pafview
Users that are interested in pafview are comparing it to the libraries listed below
Sorting:
- base-level dotplots from PAF alignments☆26Updated last month
- ☆25Updated 3 weeks ago
- convert variation graph alignments to coverage maps over nodes☆24Updated 2 months ago
- Extracts subgraphs or components from a graph in GFA format☆24Updated 9 months ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆14Updated 2 weeks ago
- Extracting paths from assembly graphs☆24Updated last year
- Long read aligner for cyclic and acyclic pangenome graphs☆39Updated last year
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Updated last year
- Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.☆12Updated 3 months ago
- Genome Assembly 102☆15Updated 4 months ago
- A plant organellar Graphical Fragment Assembly toolkit☆16Updated 10 months ago
- ☆21Updated this week
- Genotyping of copy number sensitive allele-specific haplotypes☆16Updated last month
- Better Alignments with Translated HMMER☆21Updated this week
- MEMO: MEM-based pangenome indexing for k-mer queries☆18Updated last year
- Map TIR-pHMM models to genomic sequences for annotation of MITES and complete DNA-Transposons.☆10Updated last month
- ☆16Updated 4 years ago
- ☆18Updated 6 months ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆18Updated 3 months ago
- recompute GFA link overlaps☆26Updated 2 years ago
- Wavefront alignment algorithm (WFA) in Golang☆30Updated last month
- Phasing reads with secondary alignments☆20Updated 9 months ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Updated 2 months ago
- Everything but the kitchen sink☆11Updated 6 months ago
- JTK -- a regional diploid genome assembler☆25Updated 10 months ago
- A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, a…☆16Updated last year
- Prefix-renaming FASTA records really fast.☆17Updated last year
- convert a multi-sample VCF file to a multiple sequence alignment (C)☆14Updated 6 years ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆25Updated 9 months ago
- PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium☆12Updated 4 months ago