chfi / pafview
☆16Updated last week
Related projects ⓘ
Alternatives and complementary repositories for pafview
- base-level dotplots from PAF alignments☆23Updated 2 years ago
- convert variation graph alignments to coverage maps over nodes☆21Updated last week
- Rust bindings to the wavefront algorithm C implementation☆18Updated 2 years ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆20Updated 11 months ago
- pangenome analyses for complete genomes of great apes (and gibbon)☆16Updated last month
- Extracting paths from assembly graphs☆22Updated 6 months ago
- ☆11Updated last week
- Filter of Pairwise Alignement☆44Updated 2 years ago
- Extracts subgraphs or components from a graph in GFA format☆23Updated this week
- Align subreads to ccs reads☆13Updated last year
- Phasing reads with secondary alignments☆16Updated 7 months ago
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆24Updated 2 months ago
- convert PAF format to CHAIN format☆26Updated 6 months ago
- recompute GFA link overlaps☆25Updated 2 years ago
- Paired REad TEXTure Mapper. Converts SAM formatted read pairs into genome contact maps.☆20Updated 2 years ago
- Statistics and analysis for variation graphs☆31Updated this week
- the pangenome graph evaluator☆23Updated 3 years ago
- Utilities to detect and profile `het-kmers`☆11Updated 3 months ago
- Minimizer-based assembly scaffolding and mapping using long reads☆31Updated last month
- ☆11Updated last year
- Long read aligner for cyclic and acyclic pangenome graphs☆35Updated 11 months ago
- Pipeline to evaluate pangenomes, e.g. from the variation it contains or how well reads map☆10Updated 2 years ago
- Shared k-mer content between two genomes☆17Updated last year
- Pangenome Graph Variation Format (PGVF)☆18Updated 4 years ago
- Very simple and configurable all-in-one dotplot program☆12Updated last year
- use variant nesting information to flter overlapping sites from vg deconstruct output☆23Updated 5 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆34Updated 9 months ago
- Scripts to split reference and run mummer in parallel on an SGE cluster☆11Updated 8 years ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆11Updated 2 months ago
- A plant organellar Graphical Fragment Assembly toolkit☆15Updated last month