Alternatives and similar repositories for pafview

Users that are interested in pafview are comparing it to the libraries listed below

• ekg / pafplot
  base-level dotplots from PAF alignments
  ☆27Updated 2 months ago
• fawaz-dabbaghieh / gfa_subgraphs
  Extracts subgraphs or components from a graph in GFA format
  ☆25Updated last year
• pangenome / gafpack
  convert variation graph alignments to coverage maps over nodes
  ☆26Updated 2 weeks ago
• magspho / hifieval
  a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).
  ☆21Updated last year
• ekg / pafcheck
  PAF (pairwise alignment format) validator based on extended CIGAR strings
  ☆15Updated 3 months ago
• MoinSebi / gfa2bin
  ☆26Updated 3 months ago
• ban-m / jtk
  JTK -- a regional diploid genome assembler
  ☆25Updated last year
• davidebolo1993 / cosigt
  COsine SImilarity-based Genotyper using pangenomes
  ☆23Updated this week
• at-cg / PanAligner
  Long read aligner for cyclic and acyclic pangenome graphs
  ☆39Updated last year
• dubssieg / rs-pancat-compare
  Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.
  ☆12Updated last month
• bluenote-1577 / devider
  Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs
  ☆31Updated last month
• marbl / rukki
  Extracting paths from assembly graphs
  ☆24Updated last year
• marbl / training
  Genome Assembly 102
  ☆14Updated 6 months ago
• codialab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆36Updated 5 months ago
• ekg / fastix
  Prefix-renaming FASTA records really fast.
  ☆16Updated last year
• StephenHwang / MEMO
  MEMO: MEM-based pangenome indexing for k-mer queries
  ☆18Updated last year
• ASLeonard / pandrawer
  Everything but the kitchen sink
  ☆11Updated 9 months ago
• mobinasri / secphase
  Phasing reads with secondary alignments
  ☆21Updated 11 months ago
• AdamCicherski / AlfaPang
  AlfaPang builds pangenome graphs without alignments or references.
  ☆13Updated last week
• cumtr / PG-SCUnK
  PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers
  ☆19Updated this week
• jmonlong / manu-vggafannot
  Efficient indexing and querying of annotations in a pangenome graph
  ☆10Updated 3 weeks ago
• tolkit / gfatk
  A plant organellar Graphical Fragment Assembly toolkit
  ☆16Updated 2 months ago
• shenwei356 / wfa
  Wavefront alignment algorithm (WFA) in Golang
  ☆32Updated 3 months ago
• TravisWheelerLab / BATH
  Better Alignments with Translated HMMER
  ☆23Updated last month
• maojanlin / biastools
  Reference bias measuring toolkit
  ☆19Updated 7 months ago
• lrobidou / KFC
  ☆19Updated 9 months ago
• Adamtaranto / TIRmite
  Map TIR-pHMM models to genomic sequences for annotation of MITES and complete DNA-Transposons.
  ☆10Updated 3 months ago
• at-cg / RAFT
  ☆28Updated last year
• marschall-lab / gaftools
  General purpose utility related to GAF files
  ☆29Updated 2 weeks ago
• pangenome / povu
  A toolkit for exploring regions of variation in a variation graph
  ☆12Updated last week