Scripts used to perform analyses in Rice et al. (2023)
☆16Dec 28, 2023Updated 2 years ago
Alternatives and similar repositories for chicken-pangenome-paper
Users that are interested in chicken-pangenome-paper are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Set of script for the paper on the cattle graph genome☆14Jan 10, 2023Updated 3 years ago
- Construct and Analyze the North American Vitis pangenome☆29Aug 19, 2025Updated 9 months ago
- Reference bias measuring toolkit☆20Mar 12, 2026Updated 2 months ago
- Code for assembly approach presented in "Haplotype-resolved assembly of a tetraploid potato genome using long reads and low-depth offspri…☆14Nov 20, 2023Updated 2 years ago
- Dynamic Elongation of a Genome Assembly Path☆25Apr 29, 2026Updated 3 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated last year
- Differential quantification of alternative splicing events on spliced pangenome graphs☆16Jan 30, 2026Updated 3 months ago
- Integrate multiple genome assemblies into a pangenome graph☆37Jun 9, 2022Updated 3 years ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆15Feb 13, 2023Updated 3 years ago
- Extracting paths from assembly graphs☆24Apr 26, 2024Updated 2 years ago
- Centromere mapping and annotation pipeline☆25May 1, 2026Updated 3 weeks ago
- ☆16Apr 9, 2021Updated 5 years ago
- The complete sequence of a Chinese individual☆13Oct 8, 2024Updated last year
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆15Apr 22, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆16Apr 3, 2023Updated 3 years ago
- Novo&Stitch is a genome assembly reconciliation tool based on optical map.☆10Oct 21, 2019Updated 6 years ago
- Show pangenome graphs in an easy way☆59Aug 7, 2025Updated 9 months ago
- ☆18Apr 28, 2026Updated 3 weeks ago
- Bash scripts and data used in pantranscriptomic paper☆24Oct 21, 2022Updated 3 years ago
- ☆27Aug 29, 2025Updated 8 months ago
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆87Dec 3, 2025Updated 5 months ago
- Very simple and configurable all-in-one dotplot program☆14Apr 1, 2023Updated 3 years ago
- Evaluation and polishing workflows for T2T genome assemblies☆154Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆16Jul 25, 2021Updated 4 years ago
- GeneMiner: a tool for extracting phylogenetic markers from next-generation sequencing data☆12Feb 22, 2024Updated 2 years ago
- An ultra-fast gzip file tools☆27Apr 25, 2024Updated 2 years ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Apr 10, 2024Updated 2 years ago
- Scripts that used in our chicken T2T manuscript.☆22Jan 14, 2026Updated 4 months ago
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 8 months ago
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆17Sep 17, 2025Updated 8 months ago
- ☆24Nov 19, 2025Updated 6 months ago
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆34Jan 3, 2022Updated 4 years ago
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆24May 16, 2026Updated last week
- Long Read Based SV Calling Tools Analysis☆14Mar 22, 2024Updated 2 years ago
- ☆35Aug 18, 2024Updated last year
- AlfaPang builds pangenome graphs without alignments or references.☆16Nov 7, 2025Updated 6 months ago
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆60Sep 6, 2025Updated 8 months ago
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆42Feb 15, 2025Updated last year