WarrenLab / chicken-pangenome-paper
Scripts used to perform analyses in Rice et al. (2023)
☆15Updated last year
Alternatives and similar repositories for chicken-pangenome-paper:
Users that are interested in chicken-pangenome-paper are comparing it to the libraries listed below
- Construct and Analyze the North American Vitis pangenome☆22Updated last year
- Set of script for the paper on the cattle graph genome☆13Updated 2 years ago
- SINE annotation tool for plant genomes☆17Updated last year
- A Hi-C scaffolding method☆22Updated 3 years ago
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆12Updated 6 years ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆13Updated 4 years ago
- Long Read Based SV Calling Tools Analysis☆13Updated 11 months ago
- ☆15Updated last year
- Genome alignment and synteny plots☆28Updated last year
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆17Updated 3 weeks ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆20Updated 5 months ago
- Simple tools for working with Hi-C data☆16Updated 6 years ago
- ☆23Updated last year
- Very simple and configurable all-in-one dotplot program☆12Updated last year
- ☆12Updated 2 years ago
- plot genome alignment synteny☆21Updated 4 years ago
- ☆16Updated 2 months ago
- The tools are used for displaying hic signal of genome☆23Updated 4 years ago
- Inferring natural selection by comparative population genomic analysis across species☆23Updated last year
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆23Updated last week
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆25Updated 3 years ago
- ☆22Updated 6 months ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆20Updated 4 years ago
- ☆15Updated 3 years ago
- A pipeline for scaffolding a genome assembly using Hi-C☆13Updated 2 years ago
- Domain based annotation of transposable elements☆19Updated last month
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Updated 8 years ago
- The MafFilter genome alignment processor☆17Updated 6 months ago
- a fork of the gap-closing pipeline PBJelly☆14Updated 6 years ago