WarrenLab / chicken-pangenome-paperLinks
Scripts used to perform analyses in Rice et al. (2023)
☆15Updated last year
Alternatives and similar repositories for chicken-pangenome-paper
Users that are interested in chicken-pangenome-paper are comparing it to the libraries listed below
Sorting:
- Construct and Analyze the North American Vitis pangenome☆25Updated last month
- Set of script for the paper on the cattle graph genome☆13Updated 2 years ago
- SINE annotation tool for plant genomes☆18Updated last year
- ☆16Updated 2 years ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆22Updated last month
- a fork of the gap-closing pipeline PBJelly☆15Updated 6 years ago
- The MafFilter genome alignment processor☆19Updated 4 months ago
- A Hi-C scaffolding method☆22Updated 3 years ago
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Updated 8 years ago
- plot genome alignment synteny☆21Updated 5 years ago
- ☆16Updated 4 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 7 months ago
- Very simple and configurable all-in-one dotplot program☆14Updated 2 years ago
- parallelLastz: Running Lastz in parallel☆17Updated last year
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆15Updated 3 weeks ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Updated 7 years ago
- ☆27Updated 6 months ago
- COsine-based SImilarity Genotyper using pangenomes☆21Updated this week
- Long Read Based SV Calling Tools Analysis☆14Updated last year
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Updated 4 years ago
- Phasing reads with secondary alignments☆20Updated 10 months ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆17Updated last month
- The tools are used for displaying hic signal of genome☆24Updated 4 years ago
- A reliable gap filling pipeline for draft genomes☆11Updated 6 years ago
- Simple tools for working with Hi-C data☆18Updated 6 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 3 months ago
- Scripts to do haplotype analysis on pan genomes.☆21Updated 5 years ago
- A pipeline for scaffolding a genome assembly using Hi-C☆13Updated 2 years ago
- Convert Tandem Repeat Finder dat file output into gff3 format☆28Updated 9 months ago
- Code for assembly approach presented in "Haplotype-resolved assembly of a tetraploid potato genome using long reads and low-depth offspri…☆14Updated last year