KolmogorovLab / hapdiffLinks
SV calling for diploid assemblies
☆28Updated last year
Alternatives and similar repositories for hapdiff
Users that are interested in hapdiff are comparing it to the libraries listed below
Sorting:
- Tool for globally phasing diploid assembly graphs with orthogonal data☆40Updated 8 months ago
- A module for improving the insertion sequences of structural variant calls☆31Updated 4 years ago
- ☆30Updated 7 months ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- ☆37Updated last year
- ☆36Updated 2 weeks ago
- ☆31Updated 5 years ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆36Updated 2 weeks ago
- Draw a dot plot from a paf alignment☆33Updated 4 months ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆14Updated 2 years ago
- Statistics and analysis for variation graphs☆45Updated 7 months ago
- ☆36Updated 2 years ago
- Programs implementing the trio-binning genome assembly method☆19Updated last year
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆41Updated 3 months ago
- ☆42Updated last year
- ☆31Updated 11 months ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆36Updated 2 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆29Updated 3 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated last month
- SV genotyper for long reads with a variation graph☆12Updated 4 months ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Updated last year
- Integrate multiple genome assemblies into a pangenome graph☆34Updated 3 years ago
- Very simple and configurable all-in-one dotplot program☆13Updated 2 years ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆35Updated 2 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 10 months ago
- ☆16Updated 3 years ago
- ☆30Updated 3 months ago
- ☆41Updated 2 months ago
- Variant annotation and merging pipeline☆39Updated 2 weeks ago