SV calling for diploid assemblies
☆32Mar 22, 2024Updated 2 years ago
Alternatives and similar repositories for hapdiff
Users that are interested in hapdiff are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pipeline to convert a haploid assembly into diploid☆113Jan 23, 2025Updated last year
- WDL workflows for variant calling and assembly using ONT☆40Oct 1, 2026Updated last week
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated last year
- Parakit is a tool to analyze the RCCX module, which contain the CYP21A2 gene, using long sequencing reads.☆18Jun 29, 2026Updated 3 months ago
- ☆133Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Tool for globally phasing diploid assembly graphs with orthogonal data☆43Nov 25, 2024Updated last year
- For bluntifying overlapped GFAs☆13Jul 26, 2024Updated 2 years ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆56Mar 5, 2025Updated last year
- De novo assembly from Oxford Nanopore reads.☆90Jun 29, 2026Updated 3 months ago
- Phasing reads with secondary alignments☆22Nov 30, 2024Updated last year
- Workflow to annotate SNVs, indels, and structural variants☆17May 13, 2025Updated last year
- Copy number caller for long read data including SNV utilization☆72Mar 31, 2025Updated last year
- Structural Variants Assessment Based on Haplotype-resolved Assemblies☆22Apr 28, 2023Updated 3 years ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆42May 19, 2026Updated 4 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Automated Detection and Qualification of Differential Methylation☆16Nov 21, 2023Updated 2 years ago
- Very simple and configurable all-in-one dotplot program☆14Apr 1, 2023Updated 3 years ago
- ☆85Mar 3, 2025Updated last year
- Phased assembly variant caller☆147Dec 4, 2024Updated last year
- convert CHAIN format to PAF format☆15Dec 17, 2024Updated last year
- ☆14May 2, 2025Updated last year
- ☆102Apr 22, 2024Updated 2 years ago
- A tool for somatic structural variant calling using long reads☆179Jun 8, 2026Updated 4 months ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆76Aug 26, 2026Updated last month
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Detect and phase minor SNVs from long-read sequencing data☆14Dec 28, 2021Updated 4 years ago
- base-level dotplots from PAF alignments☆36Sep 18, 2025Updated last year
- Tandem repeat genotyping with long reads☆40Sep 23, 2025Updated last year
- ☆43Oct 6, 2025Updated last year
- ☆45Dec 29, 2025Updated 9 months ago
- ☆68Apr 9, 2024Updated 2 years ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆23Jul 29, 2026Updated 2 months ago
- A tool for performing collinearity-incorporating homology inference☆34Jul 17, 2026Updated 2 months ago
- ☆18Jan 29, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A battery of methylation tools for PacBio HiFi reads☆57Jul 15, 2026Updated 2 months ago
- A viewer for multiple alignment format (MAF) files in JBrowse 2☆14Aug 4, 2026Updated 2 months ago
- ☆42May 19, 2025Updated last year
- ☆22Oct 1, 2026Updated last week
- ☆33Jul 13, 2026Updated 2 months ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆120Jun 6, 2021Updated 5 years ago
- Jasmine: SV Merging Across Samples☆261Dec 20, 2024Updated last year