KolmogorovLab / hapdiffLinks
SV calling for diploid assemblies
☆28Updated last year
Alternatives and similar repositories for hapdiff
Users that are interested in hapdiff are comparing it to the libraries listed below
Sorting:
- Tool for globally phasing diploid assembly graphs with orthogonal data☆40Updated 7 months ago
- ☆37Updated last year
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- ☆30Updated 5 years ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Updated 11 months ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- ☆30Updated 6 months ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆36Updated last week
- ☆35Updated 2 years ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 4 years ago
- ☆36Updated last week
- ☆30Updated 2 months ago
- Draw a dot plot from a paf alignment☆30Updated 3 months ago
- Combine structural variation outputs from long sequencing reads into a superior call set☆17Updated last year
- A Hi-C scaffolding method☆23Updated 3 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated last month
- Statistics and analysis for variation graphs☆41Updated 7 months ago
- ☆42Updated last year
- ☆31Updated 10 months ago
- Very simple and configurable all-in-one dotplot program☆13Updated 2 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆40Updated 3 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 9 months ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆21Updated 4 years ago
- SV genotyper for long reads with a variation graph☆12Updated 3 months ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆35Updated 2 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆36Updated 2 years ago
- Integrate multiple genome assemblies into a pangenome graph☆34Updated 3 years ago
- Identification of transposable element families from pangenome polymorphisms☆51Updated last month
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆36Updated 5 months ago