lh3 / gwfaLinks
Proof-of-concept implementation of GWFA for sequence-to-graph alignment
☆57Updated last year
Alternatives and similar repositories for gwfa
Users that are interested in gwfa are comparing it to the libraries listed below
Sorting:
- C implementation of the Landau-Vishkin algorithm☆35Updated 3 years ago
- Refinements of the WFA alignment algorithm with better complexity☆26Updated 3 years ago
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆50Updated last year
- Optimized sequence graph implementations for graph genomics☆34Updated 2 weeks ago
- GFA insert into GenomicSQLite☆49Updated 4 years ago
- Efficient, parallel compression for terabyte-scale data☆48Updated 3 months ago
- Benchmarking pairwise aligners☆36Updated 6 months ago
- GBWT-based handle graph☆31Updated last month
- Parallel Sequence to Graph Alignment☆37Updated 2 years ago
- Bidirectional WFA (Paper)☆47Updated last year
- ☆28Updated 4 months ago
- linearize and simplify variation graphs using blocked partial order alignment☆58Updated 2 weeks ago
- extract MSAs from genome variation graphs☆33Updated 4 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆43Updated last month
- Lift-over alignments from variant-aware references☆35Updated 2 years ago
- GFA visualizer, GPU-accelerated using Vulkan☆73Updated 3 years ago
- ☆17Updated 2 years ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆55Updated 3 years ago
- Snakemake pipeline for benchmarking read mappers☆16Updated last year
- Filter of Pairwise Alignement☆45Updated 3 years ago
- A versatile compressor of third generation sequencing reads.☆51Updated last year
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆25Updated 4 years ago
- REINDEER REad Index for abuNDancE quERy☆57Updated last month
- Tumour-only somatic mutation calling using long reads☆27Updated 9 months ago
- Sensitive and Fast Alignment Search Tool for Long Read sequencing Data.☆41Updated 6 years ago
- Efficient low-divergence mapping of long reads in minimizer space☆67Updated last year
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆52Updated 2 weeks ago
- de Bruijn Graph-based read aligner☆33Updated 6 years ago
- A streaming method for mapping nanopore raw signals☆32Updated 3 years ago