prophyle / prophasm
ProphAsm – a rapid computation of simplitigs directly from k-mer sets
☆26Updated 2 years ago
Alternatives and similar repositories for prophasm:
Users that are interested in prophasm are comparing it to the libraries listed below
- Next Index to Query Kmer Intersection☆16Updated 2 years ago
- Robust individual and aggregate checksums for nucleotide sequences☆16Updated last year
- Iterate k-min-mers from a DNA sequence in Rust☆13Updated last year
- the we-flyin WFA-guided ultralong tiling sequence aligner☆11Updated 3 years ago
- ☆15Updated 4 years ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆12Updated 6 years ago
- Minimum plain text representation of kmer sets☆17Updated 3 months ago
- ☆25Updated 3 years ago
- RabbitMash: an efficient highly optimized implementation of Mash.☆21Updated last year
- mSWEEP High-resolution sweep metagenomics using fast probabilistic inference☆14Updated 6 months ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- Indel-aware consensus for aligned BAM☆21Updated last month
- Contains the description of a file format to store kmers and associated values☆32Updated 2 years ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated last year
- ☆14Updated 9 years ago
- Universal K-mer Hitting Set library in Rust☆10Updated 4 years ago
- Pipeline to evaluate pangenomes, e.g. from the variation it contains or how well reads map☆10Updated 3 years ago
- Hidden Markov Model based Copy number caller☆20Updated 6 months ago
- Utilities to detect and profile `het-kmers`☆11Updated 9 months ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- de Bruijn graph cOrrectiOn from graph aLignment☆11Updated 4 years ago
- ☆16Updated 7 years ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆31Updated 3 years ago
- Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.☆13Updated 2 years ago
- recompute GFA link overlaps☆25Updated 2 years ago
- Shared k-mer content between two genomes☆17Updated last year
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆13Updated 5 years ago
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Updated 5 years ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆18Updated 10 months ago
- ☆14Updated 2 years ago