Alternatives and similar repositories for prophasm

Users that are interested in prophasm are comparing it to the libraries listed below

• Malfoy / NIQKI
  Next Index to Query Kmer Intersection
  ☆16Updated 2 years ago
• richarddurbin / syng
  syncmer graphs, and perhaps other sorts of sequence graphs
  ☆21Updated 5 months ago
• langmead-lab / vargas
  ☆24Updated 3 weeks ago
• rchikhi / rust-seq2kminmers
  Iterate k-min-mers from a DNA sequence in Rust
  ☆13Updated last year
• ekg / wflign
  the we-flyin WFA-guided ultralong tiling sequence aligner
  ☆10Updated 4 years ago
• algbio / matchtigs
  Minimum plain text representation of kmer sets
  ☆16Updated 7 months ago
• edawson / mkmh
  Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.
  ☆24Updated 4 years ago
• hanzou666 / msa2gfa
  A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg
  ☆11Updated 6 years ago
• chfi / gfainject
  ☆17Updated 2 years ago
• ChaissonLab / hmcnc
  Hidden Markov Model based Copy number caller
  ☆20Updated 10 months ago
• Kmer-File-Format / kff-reference
  Contains the description of a file format to store kmers and associated values
  ☆33Updated 3 years ago
• lh3 / gfa1
  This repo is deprecated. Please use gfatools instead.
  ☆15Updated 7 years ago
• bede / seqsum
  Robust individual and aggregate checksums for nucleotide sequences
  ☆17Updated last year
• edawson / svaha2
  Linear-time, low-memory construction of variation graphs
  ☆20Updated 5 years ago
• bede / kindel
  Indel-aware consensus for aligned BAM
  ☆21Updated 3 weeks ago
• richarddurbin / modimizer
  a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
  ☆37Updated 4 years ago
• Malfoy / BCOOL
  de Bruijn graph cOrrectiOn from graph aLignment
  ☆11Updated 5 years ago
• edawson / svaha
  Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]
  ☆11Updated last year
• gregorykucherov / spaced-seeds-for-metagenomics
  ☆13Updated 9 years ago
• kehrlab / PopIns2
  Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs
  ☆24Updated last year
• thegenemyers / PHASE-MERS
  Utilities to detect and profile `het-kmers`
  ☆11Updated last year
• mklarqvist / djinn
  C++ library for analysing and storing large-scale cohorts of sequence variant data
  ☆17Updated 6 years ago
• VGP / vgp-tools
  ☆28Updated 5 months ago
• at-cg / minichain
  Long-read aligner to pangenome graphs
  ☆26Updated last year
• jltsiren / gbwtgraph
  GBWT-based handle graph
  ☆31Updated 2 months ago
• fawaz-dabbaghieh / gfa_subgraphs
  Extracts subgraphs or components from a graph in GFA format
  ☆24Updated 9 months ago
• lynxoid / nimbliner
  nimble aligner that will map your reads to the references on a laptop
  ☆11Updated 8 years ago
• AntonBankevich / jumboDB
  De Bruijn graph construction for large k.
  ☆17Updated 4 years ago
• ZekunYin / RabbitMash
  RabbitMash: an efficient highly optimized implementation of Mash.
  ☆20Updated last year
• DecodeGenetics / LRcaller
  ☆16Updated 3 years ago