prophyle / prophasmLinks
ProphAsm – a rapid computation of simplitigs directly from k-mer sets
☆26Updated 2 years ago
Alternatives and similar repositories for prophasm
Users that are interested in prophasm are comparing it to the libraries listed below
Sorting:
- ☆25Updated 4 years ago
- Next Index to Query Kmer Intersection☆16Updated 2 years ago
- Iterate k-min-mers from a DNA sequence in Rust☆13Updated last year
- the we-flyin WFA-guided ultralong tiling sequence aligner☆11Updated 4 years ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆12Updated 6 years ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆20Updated 3 months ago
- Minimum plain text representation of kmer sets☆17Updated 5 months ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- Contains the description of a file format to store kmers and associated values☆32Updated 2 years ago
- Robust individual and aggregate checksums for nucleotide sequences☆17Updated last year
- RabbitMash: an efficient highly optimized implementation of Mash.☆21Updated last year
- Indel-aware consensus for aligned BAM☆21Updated 3 months ago
- Hidden Markov Model based Copy number caller☆20Updated 8 months ago
- de Bruijn graph cOrrectiOn from graph aLignment☆11Updated 4 years ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆13Updated 5 years ago
- De Bruijn graph construction for large k.☆18Updated 3 years ago
- mSWEEP High-resolution sweep metagenomics using fast probabilistic inference☆14Updated 9 months ago
- Utilities to detect and profile `het-kmers`☆11Updated 11 months ago
- ☆14Updated 4 years ago
- ☆14Updated 9 years ago
- ☆28Updated 3 months ago
- ☆16Updated 2 years ago
- Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.☆13Updated 2 years ago
- recompute GFA link overlaps☆25Updated 2 years ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- ☆16Updated 7 years ago
- nimble aligner that will map your reads to the references on a laptop☆12Updated 8 years ago
- ☆25Updated 4 years ago
- ☆32Updated 2 years ago