prophyle / prophasmLinks
ProphAsm – a rapid computation of simplitigs directly from k-mer sets
☆26Updated 2 years ago
Alternatives and similar repositories for prophasm
Users that are interested in prophasm are comparing it to the libraries listed below
Sorting:
- the we-flyin WFA-guided ultralong tiling sequence aligner☆11Updated 4 years ago
- Robust individual and aggregate checksums for nucleotide sequences☆16Updated last year
- Next Index to Query Kmer Intersection☆16Updated 2 years ago
- Iterate k-min-mers from a DNA sequence in Rust☆13Updated last year
- ☆14Updated 9 years ago
- Minimum plain text representation of kmer sets☆17Updated 4 months ago
- Contains the description of a file format to store kmers and associated values☆32Updated 2 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆20Updated 2 months ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆12Updated 6 years ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.