Method to optimally select samples for validation and resequencing
☆30Apr 6, 2021Updated 4 years ago
Alternatives and similar repositories for SVCollector
Users that are interested in SVCollector are comparing it to the libraries listed below
Sorting:
- Linear-time, low-memory construction of variation graphs☆20Feb 3, 2020Updated 6 years ago
- linearize and simplify variation graphs using blocked partial order alignment☆61Feb 25, 2026Updated last week
- Kmer based genotyper for short reads.☆23Oct 19, 2021Updated 4 years ago
- ☆51Aug 27, 2019Updated 6 years ago
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Mar 12, 2018Updated 7 years ago
- Pangenome graphs (review article on graph-based pangenomic methods)☆72Apr 15, 2020Updated 5 years ago
- ☆31Nov 25, 2019Updated 6 years ago
- ☆21Nov 1, 2019Updated 6 years ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆11Mar 6, 2024Updated 2 years ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Nov 22, 2019Updated 6 years ago
- Pangenome Graph Variation Format (PGVF)☆19Sep 24, 2020Updated 5 years ago
- ☆16Jan 10, 2022Updated 4 years ago
- ☆46Jun 21, 2020Updated 5 years ago
- ☆26Aug 10, 2021Updated 4 years ago
- Graphical interactive tool for the visualization of sequence graphs in GFA format.☆73Feb 19, 2019Updated 7 years ago
- Characterization of Structural Variation in Chinese samples☆18Dec 22, 2021Updated 4 years ago
- ☆10Jun 13, 2020Updated 5 years ago
- Code for phasing SVs with SNPs☆54Mar 27, 2020Updated 5 years ago
- Graph realignment tools for structural variants☆166Dec 8, 2022Updated 3 years ago
- RelocaTE2☆18Oct 6, 2023Updated 2 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆18Apr 2, 2020Updated 5 years ago
- Structural Variant Index☆75Dec 13, 2024Updated last year
- ☆11Dec 9, 2022Updated 3 years ago
- GBWT-based handle graph☆31Updated this week
- ☆78Jun 12, 2020Updated 5 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆49Sep 2, 2025Updated 6 months ago
- Tools for the analysis of structural variation in genomes☆81Feb 23, 2026Updated 2 weeks ago
- Genome inference from a population reference graph☆96Apr 1, 2025Updated 11 months ago
- Reducing reference bias using multiple population reference genomes☆34May 27, 2024Updated last year
- Structural variant caller for low-depth long-read sequencing data☆30Jan 6, 2025Updated last year
- Long read aligner☆114May 26, 2023Updated 2 years ago
- hot_scan is a free software to detect genomic regions unusually rich (hotspot) in a given pattern via scan statistics☆10Oct 17, 2013Updated 12 years ago
- Comprehensive benchmark of structural variant callers☆48Feb 4, 2021Updated 5 years ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆106Jun 6, 2021Updated 4 years ago
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Sep 19, 2022Updated 3 years ago
- Genotyping of segregating mobile elements insertions☆19Jul 29, 2021Updated 4 years ago
- A software for discovery, genotyping and characterization of structural variants☆22Sep 11, 2024Updated last year
- Jasmine: SV Merging Across Samples☆241Dec 20, 2024Updated last year
- Structural variant merging tool☆57Aug 23, 2024Updated last year