lh3 / miniwfaLinks
A reimplementation of the WaveFront Alignment algorithm at low memory
☆50Updated last year
Alternatives and similar repositories for miniwfa
Users that are interested in miniwfa are comparing it to the libraries listed below
Sorting:
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆55Updated 3 years ago
- MONI: A Pangenomic Index for Finding MEMs☆37Updated 9 months ago
- C implementation of the Landau-Vishkin algorithm☆35Updated 3 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 6 months ago
- ☆16Updated 2 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- ☆67Updated last year
- Graphical interactive tool for the visualization of sequence graphs in GFA format.☆71Updated 6 years ago
- Bidirectional WFA (Paper)☆48Updated last year
- Python wrapper for wavefront alignment using WFA2-lib☆38Updated last year
- linearize and simplify variation graphs using blocked partial order alignment☆59Updated 5 months ago
- Banded Striped DNA Sequence Alignment☆49Updated 2 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆47Updated 3 months ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- ☆35Updated 5 years ago
- Parallel Sequence to Graph Alignment☆36Updated 3 years ago
- GFA visualizer, GPU-accelerated using Vulkan☆74Updated 3 years ago
- Fast and exact gap-affine partial order alignment☆57Updated last month
- GFA insert into GenomicSQLite☆49Updated 4 years ago
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago
- Statistics and analysis for variation graphs☆47Updated last year
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆27Updated 8 months ago
- Efficient low-divergence mapping of long reads in minimizer space☆70Updated 2 years ago
- REINDEER REad Index for abuNDancE quERy☆56Updated 5 months ago
- Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.☆70Updated last year
- Graph-based mapping of long sequences, noisy or HiFi.☆55Updated 5 years ago
- Pan-Genomic Matching Statistics☆55Updated last year
- The Modular Aligner and The Modular SV Caller☆46Updated 2 years ago
- Efficient, parallel compression for terabyte-scale data☆55Updated 2 months ago
- Tumour-only somatic mutation calling using long reads☆28Updated last year