lh3 / miniwfaLinks
A reimplementation of the WaveFront Alignment algorithm at low memory
☆49Updated last year
Alternatives and similar repositories for miniwfa
Users that are interested in miniwfa are comparing it to the libraries listed below
Sorting:
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated last month
- Efficient low-divergence mapping of long reads in minimizer space☆67Updated last year
- ☆17Updated 2 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆43Updated last month
- Python wrapper for wavefront alignment using WFA2-lib☆35Updated 7 months ago
- GFA insert into GenomicSQLite☆49Updated 4 years ago
- Pan-Genomic Matching Statistics☆52Updated last year
- Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.☆64Updated last year
- ☆67Updated last year
- Statistics and analysis for variation graphs☆41Updated 6 months ago
- Fast and exact gap-affine partial order alignment☆52Updated this week
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- ☆28Updated 9 months ago
- Banded Striped DNA Sequence Alignment☆45Updated 2 years ago
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆55Updated last year
- Parallel Sequence to Graph Alignment☆37Updated 2 years ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆36Updated last week
- Differential k-mer analysis☆36Updated last year
- Tumour-only somatic mutation calling using long reads☆27Updated 8 months ago
- ☆30Updated 2 months ago
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆51Updated 3 weeks ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Mumemto: multi-MUM and MEM finding across pangenomes☆101Updated last week
- ☆17Updated 4 years ago
- VNTR annotation using motif selection☆35Updated last month
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆49Updated 4 months ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Efficient, parallel compression for terabyte-scale data☆47Updated 2 months ago
- A versatile compressor of third generation sequencing reads.☆51Updated last year
- ☆34Updated 5 years ago