A reimplementation of the WaveFront Alignment algorithm at low memory
☆51May 22, 2024Updated 2 years ago
Alternatives and similar repositories for miniwfa
Users that are interested in miniwfa are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Proof-of-concept implementation of GWFA for sequence-to-graph alignment☆57May 29, 2024Updated 2 years ago
- Refinements of the WFA alignment algorithm with better complexity☆26Mar 31, 2022Updated 4 years ago
- Next Index to Query Kmer Intersection☆17Feb 1, 2023Updated 3 years ago
- Bidirectional WFA (Paper)☆50May 20, 2024Updated 2 years ago
- the we-flyin WFA-guided ultralong tiling sequence aligner☆10May 13, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆29Jul 12, 2026Updated last month
- Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment☆199Mar 8, 2022Updated 4 years ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆222Updated this week
- Iterate k-min-mers from a DNA sequence in Rust☆13Apr 8, 2024Updated 2 years ago
- WFA-lib: Wavefront alignment algorithm library v2☆225Updated this week
- nimble aligner that will map your reads to the references on a laptop☆11Jun 29, 2017Updated 9 years ago
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆44Nov 18, 2023Updated 2 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆40May 4, 2026Updated 3 months ago
- linearize and simplify variation graphs using blocked partial order alignment☆63Jul 27, 2026Updated 2 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Assembled Genomes Compressor☆186Jul 22, 2026Updated 2 weeks ago
- Parallel Sequence to Graph Alignment☆35Nov 26, 2022Updated 3 years ago
- BWT construction and search☆130Jan 14, 2026Updated 6 months ago
- Global alignment and alignment extension☆143Jun 27, 2023Updated 3 years ago
- GBWT-based handle graph☆35Jun 17, 2026Updated last month
- Rust bindings to the wavefront algorithm C implementation☆17Sep 20, 2022Updated 3 years ago
- C implementation of the Landau-Vishkin algorithm☆36Apr 8, 2022Updated 4 years ago
- alignment to variation graph inducer☆163Jul 29, 2026Updated 2 weeks ago
- A pairwise sequence aligner written in Rust☆153May 22, 2026Updated 2 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Singular Genomics Demultiplexing Tool☆16Mar 5, 2024Updated 2 years ago
- Pairwise nucleotide alignment benchmark of Rust bindings☆31Jul 27, 2023Updated 3 years ago
- ☆11Dec 9, 2022Updated 3 years ago
- ☆20Aug 18, 2020Updated 5 years ago
- AStarix: Fast and Optimal Sequence-to-Graph Aligner☆74Dec 25, 2021Updated 4 years ago
- GBZ file format for pangenome graphs☆46Apr 18, 2026Updated 3 months ago
- Fast and exact gap-affine partial order alignment☆70Apr 25, 2026Updated 3 months ago
- A repository for generating strobemers and evalaution☆79Apr 16, 2024Updated 2 years ago
- Simple succinct data structures (in Rust)☆55Apr 18, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Mar 27, 2019Updated 7 years ago
- Lift-over alignments from variant-aware references☆34Mar 4, 2023Updated 3 years ago
- BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy…☆47May 10, 2023Updated 3 years ago
- ☆19May 10, 2023Updated 3 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆27Apr 29, 2024Updated 2 years ago
- ☆24Apr 2, 2021Updated 5 years ago
- find likely coding segments in DNA using composition-normalised hexamer tables☆18Oct 18, 2024Updated last year