Alternatives and similar repositories for miniwfa:

Users that are interested in miniwfa are comparing it to the libraries listed below

• marschall-lab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆35Updated 3 weeks ago
• Kmer-File-Format / kff-tools
  ☆17Updated last year
• MoinSebi / gretl
  Statistics and analysis for variation graphs
  ☆33Updated last month
• rcedgar / urmap
  URMAP ultra-fast read mapper
  ☆38Updated 4 years ago
• jts / smrest
  Tumour-only somatic mutation calling using long reads
  ☆25Updated 3 months ago
• kcleal / pywfa
  Python wrapper for wavefront alignment using WFA2-lib
  ☆35Updated 2 months ago
• Parsoa / SVDSS
  Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)
  ☆42Updated 3 months ago
• tlemane / kmdiff
  Differential k-mer analysis
  ☆34Updated last year
• UCSC-nanopore-cgl / MarginPolish
  MarginPolish: Graph based assembly polishing
  ☆46Updated 4 years ago
• seryrzu / unialigner
  ☆64Updated 9 months ago
• vikshiv / mumemto
  Mumemto: multi-MUM and MEM finding across pangenomes
  ☆63Updated this week
• oma219 / spumoni
  Pan-Genomic Matching Statistics
  ☆48Updated 9 months ago
• pangenome / gafpack
  convert variation graph alignments to coverage maps over nodes
  ☆22Updated this week
• ekimb / mapquik
  Efficient low-divergence mapping of long reads in minimizer space
  ☆65Updated last year
• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆46Updated 3 years ago
• Kmer-File-Format / kff-reference
  Contains the description of a file format to store kmers and associated values
  ☆32Updated 2 years ago
• mlin / gfabase
  GFA insert into GenomicSQLite
  ☆48Updated 3 years ago
• edawson / gfakluge
  A C++ library and utilities for manipulating the Graphical Fragment Assembly format.
  ☆52Updated 2 years ago
• ddiazdom / lcg
  Efficient, parallel compression for terabyte-scale data
  ☆38Updated last week
• benedictpaten / marginPhase
  ☆34Updated 4 years ago
• VGP / vgp-tools
  ☆28Updated last year
• YingZhou001 / Immuannot
  Immuological gene typing and annotation for genome assembly
  ☆31Updated 3 months ago
• jermp / fulgor
  Fulgor is a fast and space-efficient colored de Bruijn graph index.
  ☆46Updated last week
• rchikhi / 2022-pangenome-graphs-intro
  ☆21Updated 4 months ago
• pangenome / impg
  implicit pangenome graph
  ☆51Updated this week
• RolandFaure / Hairsplitter
  Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.
  ☆34Updated last month
• kage-genotyper / kage
  Alignment-free genotyper for SNPs and short indels, implemented in Python.
  ☆48Updated 4 months ago
• vgteam / libbdsg
  Optimized sequence graph implementations for graph genomics
  ☆34Updated last month
• mrvollger / SDA
  Segmental Duplication Assembler (SDA).
  ☆44Updated last year
• lh3 / htsbox
  My experimental tools on top of htslib. NOT OFFICIAL!!!
  ☆54Updated last year