Alternatives and similar repositories for miniwfa

Users that are interested in miniwfa are comparing it to the libraries listed below

• marschall-lab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆36Updated last month
• vikshiv / mumemto
  Mumemto: multi-MUM and MEM finding across pangenomes
  ☆79Updated 2 weeks ago
• rcedgar / urmap
  URMAP ultra-fast read mapper
  ☆38Updated 4 years ago
• rchikhi / 2022-pangenome-graphs-intro
  ☆28Updated 7 months ago
• UCSC-nanopore-cgl / MarginPolish
  MarginPolish: Graph based assembly polishing
  ☆46Updated 4 years ago
• jts / smrest
  Tumour-only somatic mutation calling using long reads
  ☆26Updated 6 months ago
• MoinSebi / gretl
  Statistics and analysis for variation graphs
  ☆39Updated 4 months ago
• Kmer-File-Format / kff-tools
  ☆17Updated last year
• oma219 / spumoni
  Pan-Genomic Matching Statistics
  ☆52Updated last year
• ekimb / mapquik
  Efficient low-divergence mapping of long reads in minimizer space
  ☆65Updated last year
• ruanjue / bsalign
  Banded Striped DNA Sequence Alignment
  ☆45Updated 2 years ago
• benedictpaten / marginPhase
  ☆34Updated 5 years ago
• ParBLiSS / PaSGAL
  Parallel Sequence to Graph Alignment
  ☆37Updated 2 years ago
• kcleal / pywfa
  Python wrapper for wavefront alignment using WFA2-lib
  ☆35Updated 5 months ago
• Parsoa / SVDSS
  Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)
  ☆42Updated 2 weeks ago
• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆46Updated 4 years ago
• tlemane / kmdiff
  Differential k-mer analysis
  ☆36Updated last year
• kage-genotyper / kage
  Alignment-free genotyper for SNPs and short indels, implemented in Python.
  ☆49Updated 2 months ago
• lh3 / etrf
  Exact Tandem Repeat Finder (not a TRF replacement)
  ☆49Updated 5 years ago
• SouthGreenPlatform / panache
  Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…
  ☆44Updated last year
• EichlerLab / smrtsv2
  Structural variant caller
  ☆54Updated 3 years ago
• thegenemyers / ONEcode
  1-code framework: docs, C-library, and tools
  ☆16Updated 3 months ago
• smehringer / SViper
  Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.
  ☆32Updated 2 years ago
• VGP / vgp-tools
  ☆28Updated last month
• llecompte / SVJedi
  SV genotyping with long reads
  ☆40Updated last year
• CASTLE-Panel / castle
  CAncer Standards Long-read Evaluation
  ☆25Updated 3 months ago
• mlin / gfabase
  GFA insert into GenomicSQLite
  ☆49Updated 3 years ago
• broadinstitute / poasta
  Fast and exact gap-affine partial order alignment
  ☆50Updated last month
• RagnarGrootKoerkamp / minimizers
  Reference implementations of minimizer schemes to go with the mod-minimizers paper.
  ☆24Updated 2 weeks ago
• mcfrith / tandem-genotypes
  ☆48Updated 10 months ago