lh3 / miniwfa

Related projects ⓘ

Alternatives and complementary repositories for miniwfa

• oma219 / spumoni
  Pan-Genomic Matching Statistics
  ☆48Updated 7 months ago
• marschall-lab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆34Updated 8 months ago
• rcedgar / urmap
  URMAP ultra-fast read mapper
  ☆39Updated 4 years ago
• jts / smrest
  Tumour-only somatic mutation calling using long reads
  ☆24Updated last week
• kcleal / pywfa
  Python wrapper for wavefront alignment using WFA2-lib
  ☆35Updated 6 months ago
• seryrzu / unialigner
  ☆64Updated 7 months ago
• MoinSebi / gretl
  Statistics and analysis for variation graphs
  ☆31Updated 3 weeks ago
• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆45Updated 3 years ago
• ggonnella / gfaviz
  Graphical interactive tool for the visualization of sequence graphs in GFA format.
  ☆63Updated 5 years ago
• Kmer-File-Format / kff-tools
  ☆17Updated last year
• Parsoa / SVDSS
  Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)
  ☆42Updated 2 weeks ago
• ekimb / mapquik
  Efficient low-divergence mapping of long reads in minimizer space
  ☆62Updated last year
• UCSC-nanopore-cgl / MarginPolish
  MarginPolish: Graph based assembly polishing
  ☆45Updated 3 years ago
• broadinstitute / poasta
  Fast and exact gap-affine partial order alignment
  ☆40Updated last week
• mourisl / centrifuger
  Classifier for metagenomic sequences using FM-index with run-block compressed BWT.
  ☆49Updated last month
• mrvollger / SafFire
  ☆26Updated 3 months ago
• jermp / fulgor
  Fulgor is a fast and space-efficient colored de Bruijn graph index.
  ☆43Updated this week
• Adamtaranto / teloclip
  A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
  ☆35Updated last week
• tlemane / kmdiff
  Differential k-mer analysis
  ☆33Updated 9 months ago
• kage-genotyper / kage
  Alignment-free genotyper for SNPs and short indels, implemented in Python.
  ☆48Updated last month
• Kmer-File-Format / kff-reference
  Contains the description of a file format to store kmers and associated values
  ☆31Updated 2 years ago
• pangenome / PanSN-spec
  Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes
  ☆31Updated 3 weeks ago
• lh3 / htsbox
  My experimental tools on top of htslib. NOT OFFICIAL!!!
  ☆53Updated last year
• ablab / VerityMap
  ☆31Updated last year
• ruanjue / bsalign
  Banded Striped DNA Sequence Alignment
  ☆45Updated last year
• refresh-bio / colord
  A versatile compressor of third generation sequencing reads.
  ☆49Updated 7 months ago
• mlin / gfabase
  GFA insert into GenomicSQLite
  ☆48Updated 3 years ago
• lh3 / pubLRasm
  ☆16Updated 3 years ago
• mrvollger / SDA
  Segmental Duplication Assembler (SDA).
  ☆44Updated last year