lh3 / miniwfaLinks
A reimplementation of the WaveFront Alignment algorithm at low memory
☆49Updated last year
Alternatives and similar repositories for miniwfa
Users that are interested in miniwfa are comparing it to the libraries listed below
Sorting:
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆55Updated 3 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 5 months ago
- MONI: A Pangenomic Index for Finding MEMs☆37Updated 7 months ago
- C implementation of the Landau-Vishkin algorithm☆35Updated 3 years ago
- linearize and simplify variation graphs using blocked partial order alignment☆59Updated 3 months ago
- Efficient low-divergence mapping of long reads in minimizer space☆68Updated 2 years ago
- Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.☆67Updated last year
- ☆16Updated 2 years ago
- Python wrapper for wavefront alignment using WFA2-lib☆37Updated 11 months ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- GFA insert into GenomicSQLite☆49Updated 4 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆46Updated 2 months ago
- Graphical interactive tool for the visualization of sequence graphs in GFA format.☆71Updated 6 years ago
- GFA visualizer, GPU-accelerated using Vulkan☆74Updated 3 years ago
- ☆66Updated last year
- Banded Striped DNA Sequence Alignment☆48Updated 2 years ago
- Fast and exact gap-affine partial order alignment☆56Updated this week
- Tumour-only somatic mutation calling using long reads☆28Updated last year
- Statistics and analysis for variation graphs☆46Updated 10 months ago
- Pan-Genomic Matching Statistics☆54Updated last year
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- A versatile compressor of third generation sequencing reads.☆51Updated last year
- MarginPolish: Graph based assembly polishing☆47Updated 4 years ago
- Bidirectional WFA (Paper)☆48Updated last year
- ☆28Updated last year
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆55Updated last week
- Optimized sequence graph implementations for graph genomics☆34Updated last week
- REINDEER REad Index for abuNDancE quERy☆56Updated 4 months ago
- The Modular Aligner and The Modular SV Caller☆46Updated 2 years ago
- ☆35Updated 5 years ago