ekg / wflign
the we-flyin WFA-guided ultralong tiling sequence aligner
☆11Updated 3 years ago
Alternatives and similar repositories for wflign:
Users that are interested in wflign are comparing it to the libraries listed below
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆12Updated 5 years ago
- split a FASTA sequence file into shorter sequences☆10Updated 4 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆26Updated 2 years ago
- Pipeline to evaluate pangenomes, e.g. from the variation it contains or how well reads map☆10Updated 3 years ago
- ☆11Updated 2 years ago
- Pangenome Graph Variation Format (PGVF)☆18Updated 4 years ago
- ☆15Updated 4 years ago
- Hidden Markov Model based Copy number caller☆20Updated 5 months ago
- Utilities to detect and profile `het-kmers`☆11Updated 7 months ago
- Iterate k-min-mers from a DNA sequence in Rust☆13Updated 11 months ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- Validation of sycnmers compared to minimizers☆11Updated 4 years ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆13Updated 5 years ago
- recompute GFA link overlaps☆25Updated 2 years ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆12Updated last year
- ☆25Updated 3 years ago
- ☆15Updated last year
- ☆12Updated 3 years ago
- Next Index to Query Kmer Intersection☆16Updated 2 years ago
- sequence to graph mapper☆11Updated 4 years ago
- de Bruijn graph cOrrectiOn from graph aLignment☆11Updated 4 years ago
- De Bruijn graph construction for large k.☆18Updated 3 years ago
- RabbitMash: an efficient highly optimized implementation of Mash.☆21Updated last year
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated 10 months ago
- pangenome analyses for complete genomes of great apes (and gibbon)☆17Updated 5 months ago
- Indel-aware consensus for aligned BAM☆21Updated 3 months ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Updated 5 years ago
- Align subreads to ccs reads☆13Updated last year
- Variant call adjudication☆16Updated 9 months ago