jltsiren / gbwt-rsLinks
GBWT in Rust
☆42Updated 5 months ago
Alternatives and similar repositories for gbwt-rs
Users that are interested in gbwt-rs are comparing it to the libraries listed below
Sorting:
- genome variation graphs constructed from HLA GRCh38 ALTs☆23Updated 3 years ago
- GBWT-based handle graph☆31Updated 2 months ago
- Rust implementation of VG handle graph☆19Updated last year
- Optimal sequence-to-graph alignment with recombinations☆36Updated last month
- GFA insert into GenomicSQLite☆48Updated 4 years ago
- SIMD-parallel BLAST X-drop DP on sequence graphs☆24Updated last year
- Pairwise nucleotide alignment benchmark of Rust bindings☆30Updated 2 years ago
- Fast and exact gap-affine partial order alignment☆54Updated last week
- Rust implementation of Flavia95's GFAtoVCF☆16Updated 3 years ago
- Rust bindings to the wavefront algorithm C implementation☆17Updated 2 years ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆25Updated 4 months ago
- convert variation graph alignments to coverage maps over nodes☆24Updated 2 months ago
- Space-efficient pseudoalignment with a colored de Bruijn graph☆52Updated 6 months ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆49Updated last year
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 3 months ago
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆52Updated this week
- Wavefront alignment algorithm (WFA) in Golang☆30Updated last month
- Multiple sequence alignment of long tandem repeats☆20Updated last month
- linearize and simplify variation graphs using blocked partial order alignment☆57Updated last month
- Refinements of the WFA alignment algorithm with better complexity☆26Updated 3 years ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Updated 4 years ago
- ☆28Updated 11 months ago
- Iterate over minimizers of a DNA sequence☆31Updated last year
- Library for the Handle Graph abstraction☆24Updated 2 weeks ago
- extract MSAs from genome variation graphs☆33Updated 4 years ago
- Pangenome Graph Variation Format (PGVF)☆19Updated 4 years ago
- Parallel Sequence to Graph Alignment☆36Updated 2 years ago
- Optimized sequence graph implementations for graph genomics☆34Updated this week
- De Bruijn graph representation in low memory☆35Updated last year