GBZ file format for pangenome graphs
☆46Sep 14, 2026Updated 2 weeks ago
Alternatives and similar repositories for gbwt-rs
Users that are interested in gbwt-rs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Rust bindings to the wavefront algorithm C implementation☆17Sep 20, 2022Updated 4 years ago
- Simple succinct data structures (in Rust)☆55Sep 14, 2026Updated 2 weeks ago
- GBWT-based handle graph☆36Aug 19, 2026Updated last month
- A rust wrapper for the spoa C++ partial order alignment library☆10Jun 11, 2025Updated last year
- find likely coding segments in DNA using composition-normalised hexamer tables☆18Oct 18, 2024Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Rust library for processing sequencing reads.☆25Sep 2, 2024Updated 2 years ago
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- convert variation graph alignments to coverage maps over nodes☆28Jan 21, 2026Updated 8 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆40Aug 20, 2026Updated last month
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated 2 years ago
- ☆27Jun 16, 2026Updated 3 months ago
- GFA visualizer, GPU-accelerated using Vulkan☆80Aug 2, 2022Updated 4 years ago
- Long read aligner for cyclic and acyclic pangenome graphs☆41Dec 20, 2023Updated 2 years ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Jun 26, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Rust implementation of Flavia95's GFAtoVCF☆16Jan 17, 2022Updated 4 years ago
- Shared k-mer content between two genomes☆19Jun 21, 2023Updated 3 years ago
- Rust implementation of VG handle graph☆19Dec 18, 2023Updated 2 years ago
- Optimal sequence-to-graph alignment with recombinations☆41Apr 28, 2026Updated 4 months ago
- Pairwise nucleotide alignment benchmark of Rust bindings☆32Jul 27, 2023Updated 3 years ago
- linearize and simplify variation graphs using blocked partial order alignment☆67Aug 21, 2026Updated last month
- Multiple sequence alignment of long tandem repeats☆34Sep 16, 2026Updated last week
- Iterate k-min-mers from a DNA sequence in Rust☆13Apr 8, 2024Updated 2 years ago
- ☆15Jun 29, 2021Updated 5 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using …☆142Jun 23, 2024Updated 2 years ago
- ☆19May 10, 2023Updated 3 years ago
- Fast and exact gap-affine partial order alignment☆71Sep 16, 2026Updated last week
- ☆11Dec 9, 2022Updated 3 years ago
- Long-read aligner to pangenome graphs☆29May 20, 2024Updated 2 years ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆51May 22, 2024Updated 2 years ago
- Rust bindings to minimap2 library☆114Sep 14, 2026Updated last week
- Compacted and colored de Bruijn graph construction and querying☆101Sep 18, 2026Updated last week
- ☆23Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆22Jul 28, 2022Updated 4 years ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆224Updated this week
- a GFA toolkit☆13Oct 4, 2024Updated last year
- An accurate aligner of long reads to a variation graph, based on co-linear chaining☆35May 23, 2025Updated last year
- ☆19Nov 21, 2024Updated last year
- genome variation graphs constructed from HLA GRCh38 ALTs☆24Dec 24, 2021Updated 4 years ago
- Space-efficient pseudoalignment with a colored de Bruijn graph☆58Mar 13, 2025Updated last year