Alternatives and similar repositories for gbwt-rs

Users that are interested in gbwt-rs are comparing it to the libraries listed below

• ekg / HLA-zoo
  genome variation graphs constructed from HLA GRCh38 ALTs
  ☆23Updated 3 years ago
• ekg / dozyg
  sequence to graph mapper
  ☆11Updated 4 years ago
• mlin / gfabase
  GFA insert into GenomicSQLite
  ☆49Updated 4 years ago
• HopedWall / rs-gfatovcf
  Rust implementation of Flavia95's GFAtoVCF
  ☆16Updated 3 years ago
• chfi / rs-handlegraph
  Rust implementation of VG handle graph
  ☆20Updated last year
• RagnarGrootKoerkamp / minimizers
  Reference implementations of minimizer schemes to go with the mod-minimizers paper.
  ☆25Updated 2 months ago
• algbio / themisto
  Space-efficient pseudoalignment with a colored de Bruijn graph
  ☆52Updated 4 months ago
• broadinstitute / poasta
  Fast and exact gap-affine partial order alignment
  ☆52Updated this week
• AlgoLab / RecGraph
  Optimal sequence-to-graph alignment with recombinations
  ☆36Updated 4 months ago
• richarddurbin / modimizer
  a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
  ☆37Updated 3 years ago
• pangenome / pgvf-spec
  Pangenome Graph Variation Format (PGVF)
  ☆20Updated 4 years ago
• natir / rustyread
  A long read simulator based on badread idea
  ☆22Updated 2 years ago
• rust-seq / minimizer-iter
  Iterate over minimizers of a DNA sequence
  ☆31Updated last year
• jermp / fulgor
  ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.
  ☆51Updated 2 weeks ago
• lh3 / miniwfa
  A reimplementation of the WaveFront Alignment algorithm at low memory
  ☆49Updated last year
• codialab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆36Updated last month
• pangenome / gafpack
  convert variation graph alignments to coverage maps over nodes
  ☆24Updated 3 weeks ago
• imartayan / CBL
  A Rust library providing fully dynamic sets of k-mers with high locality
  ☆45Updated 9 months ago
• rchikhi / rust-seq2kminmers
  Iterate k-min-mers from a DNA sequence in Rust
  ☆13Updated last year
• ParBLiSS / PaSGAL
  Parallel Sequence to Graph Alignment
  ☆37Updated 2 years ago
• shenwei356 / wfa
  Wavefront alignment algorithm (WFA) in Golang
  ☆29Updated 8 months ago
• natir / nuc2bit
  ☆14Updated 4 years ago
• at-cg / PanAligner
  Long read aligner for cyclic and acyclic pangenome graphs
  ☆37Updated last year
• biointec / browniealigner
  Alignment algorithm for short Illumina reads to a de Bruijn graph
  ☆16Updated 6 years ago
• Kmer-File-Format / kff-tools
  ☆17Updated 2 years ago
• pairwise-alignment / pa-bench
  Benchmarking pairwise aligners
  ☆36Updated 5 months ago
• moold / kseq-rs
  A FASTA/FASTQ format parser library
  ☆20Updated last year
• jeizenga / centrolign
  Multiple sequence alignment of long tandem repeats
  ☆19Updated last week
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆48Updated last year
• jltsiren / gbwtgraph
  GBWT-based handle graph
  ☆31Updated 2 weeks ago