jltsiren / gbwt-rsLinks
GBWT in Rust
☆43Updated 7 months ago
Alternatives and similar repositories for gbwt-rs
Users that are interested in gbwt-rs are comparing it to the libraries listed below
Sorting:
- genome variation graphs constructed from HLA GRCh38 ALTs☆23Updated 3 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 5 months ago
- GFA insert into GenomicSQLite☆49Updated 4 years ago
- Pairwise nucleotide alignment benchmark of Rust bindings☆30Updated 2 years ago
- convert variation graph alignments to coverage maps over nodes☆26Updated last week
- Rust implementation of Flavia95's GFAtoVCF☆16Updated 3 years ago
- Rust bindings to the wavefront algorithm C implementation☆17Updated 3 years ago
- Optimal sequence-to-graph alignment with recombinations☆38Updated 3 months ago
- GBWT-based handle graph☆31Updated last week
- Fast and exact gap-affine partial order alignment☆56Updated this week
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆27Updated 6 months ago
- SIMD-parallel BLAST X-drop DP on sequence graphs☆24Updated last year
- Space-efficient pseudoalignment with a colored de Bruijn graph☆52Updated 8 months ago
- Multiple sequence alignment of long tandem repeats☆22Updated 3 months ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆49Updated last year
- Library for the Handle Graph abstraction☆24Updated 3 weeks ago
- Rust implementation of VG handle graph☆19Updated last year
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆55Updated 2 weeks ago
- Refinements of the WFA alignment algorithm with better complexity☆26Updated 3 years ago
- A rust wrapper for the spoa C++ partial order alignment library☆10Updated 5 months ago
- ☆28Updated last year
- Iterate k-min-mers from a DNA sequence in Rust☆13Updated last year
- Long read aligner for cyclic and acyclic pangenome graphs☆39Updated last year
- Parallel Sequence to Graph Alignment☆36Updated 2 years ago
- Filter of Pairwise Alignement☆44Updated 3 years ago
- Pangenome Graph Variation Format (PGVF)☆19Updated 5 years ago
- linearize and simplify variation graphs using blocked partial order alignment☆59Updated 3 months ago
- extract MSAs from genome variation graphs☆34Updated 5 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- Benchmarking pairwise aligners☆36Updated 9 months ago