Alternatives and similar repositories for gbwt-rs:

Users that are interested in gbwt-rs are comparing it to the libraries listed below

• ekg / HLA-zoo
  genome variation graphs constructed from HLA GRCh38 ALTs
  ☆22Updated 3 years ago
• pangenome / gafpack
  convert variation graph alignments to coverage maps over nodes
  ☆22Updated last month
• AlgoLab / RecGraph
  Optimal sequence-to-graph alignment with recombinations
  ☆25Updated last week
• marschall-lab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆35Updated last week
• ekg / dozyg
  sequence to graph mapper
  ☆11Updated 3 years ago
• lh3 / miniwfa
  A reimplementation of the WaveFront Alignment algorithm at low memory
  ☆49Updated 7 months ago
• broadinstitute / poasta
  Fast and exact gap-affine partial order alignment
  ☆41Updated last month
• rchikhi / 2022-pangenome-graphs-intro
  ☆21Updated 3 months ago
• mlin / gfabase
  GFA insert into GenomicSQLite
  ☆48Updated 3 years ago
• chfi / rs-handlegraph
  Rust implementation of VG handle graph
  ☆18Updated last year
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆47Updated 6 months ago
• natir / rustyread
  A long read simulator based on badread idea
  ☆20Updated 2 years ago
• rust-seq / minimizer-iter
  Iterate over minimizers of a DNA sequence
  ☆27Updated 6 months ago
• jltsiren / gbwtgraph
  GBWT-based handle graph
  ☆31Updated this week
• RagnarGrootKoerkamp / minimizers
  Reference implementations of minimizer schemes to go with the mod-minimizers paper.
  ☆22Updated this week
• pangenome / pgge
  the pangenome graph evaluator
  ☆24Updated 3 years ago
• moold / kseq-rs
  A FASTA/FASTQ format parser library
  ☆20Updated 10 months ago
• richarddurbin / modimizer
  a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
  ☆37Updated 3 years ago
• algbio / themisto
  Space-efficient pseudoalignment with a colored de Bruijn graph
  ☆52Updated last month
• pangenome / maffer
  extract MSAs from genome variation graphs
  ☆33Updated 4 years ago
• pangenome / pgvf-spec
  Pangenome Graph Variation Format (PGVF)
  ☆18Updated 4 years ago
• ParBLiSS / PaSGAL
  Parallel Sequence to Graph Alignment
  ☆35Updated 2 years ago
• jeizenga / wfalm
  Refinements of the WFA alignment algorithm with better complexity
  ☆26Updated 2 years ago
• marschall-lab / gaftools
  General purpose utility related to GAF files
  ☆22Updated last week
• mkirsche / sapling
  SAPLING: Suffix Array Piecewise Linear INdex for Genomics
  ☆25Updated 4 years ago
• jermp / fulgor
  Fulgor is a fast and space-efficient colored de Bruijn graph index.
  ☆46Updated this week
• natir / biotest
  Generate random test data for bioinformatics
  ☆25Updated 7 months ago
• shenwei356 / wfa
  Wavefront alignment algorithm (WFA) in Golang
  ☆30Updated 2 months ago
• Malfoy / Blight
  De Bruijn graph representation in low memory
  ☆36Updated 6 months ago
• chfi / gfainject
  ☆14Updated last year