mbhall88 / pafpyLinks
A lightweight library for working with PAF (Pairwise mApping Format) files
☆31Updated 3 years ago
Alternatives and similar repositories for pafpy
Users that are interested in pafpy are comparing it to the libraries listed below
Sorting:
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 7 months ago
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- ☆32Updated 2 years ago
- GFA insert into GenomicSQLite☆49Updated 4 years ago
- Wavefront alignment algorithm (WFA) in Golang☆29Updated 8 months ago
- Long read aligner for cyclic and acyclic pangenome graphs☆39Updated last year
- Genome browser hub for the T2T genomes and resources☆23Updated 3 weeks ago
- Generate interactive dotplot from mummer4 output using plotly☆27Updated 5 years ago
- Benchmark structural variant calls against a reference set☆17Updated 8 months ago
- Detect and phase minor SNVs from long-read sequencing data☆14Updated 3 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated last month
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆20Updated 3 months ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆43Updated last month
- General purpose utility related to GAF files☆28Updated last week
- Population-wide Deletion Calling☆35Updated 3 months ago
- A long-read analysis toolbox for cancer and population genomics☆23Updated 2 weeks ago
- Python wrapper for wavefront alignment using WFA2-lib☆35Updated 7 months ago
- Kmer Analysis of Pileups for Genotyping☆31Updated 3 weeks ago
- Filter of Pairwise Alignement☆44Updated 3 years ago
- ☆42Updated 2 weeks ago
- Optimized sequence graph implementations for graph genomics☆34Updated this week
- Method to optimally select samples for validation and resequencing☆28Updated 4 years ago
- recompute GFA link overlaps☆25Updated 2 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆43Updated last year
- Convert HAL to VG☆22Updated 11 months ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- ☆16Updated 4 years ago
- ☆45Updated 3 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆36Updated 2 years ago