pangenome / mafferLinks
extract MSAs from genome variation graphs
☆33Updated 5 years ago
Alternatives and similar repositories for maffer
Users that are interested in maffer are comparing it to the libraries listed below
Sorting:
- GFA insert into GenomicSQLite☆49Updated 4 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 5 months ago
- Differential k-mer analysis☆37Updated last year
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 6 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated last year
- Improved Phased Assembler☆28Updated 3 years ago
- the pangenome graph evaluator☆29Updated 4 years ago
- Filter of Pairwise Alignement☆44Updated 3 years ago
- Long read aligner for cyclic and acyclic pangenome graphs☆39Updated last year
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆29Updated 2 months ago
- General purpose utility related to GAF files☆29Updated last month
- recompute GFA link overlaps☆25Updated 3 years ago
- ☆40Updated 2 months ago
- convert variation graph alignments to coverage maps over nodes☆26Updated last week
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- Convert HAL to VG☆22Updated last year
- ☆28Updated last year
- Statistics and analysis for variation graphs☆45Updated 10 months ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆35Updated 4 months ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆40Updated last year
- Extracts subgraphs or components from a graph in GFA format☆25Updated 11 months ago
- ☆35Updated 5 years ago
- Long-read aligner to pangenome graphs☆27Updated last year
- Tool for decomposition centromeric assemblies and long reads into monomers☆35Updated 3 years ago
- ☆25Updated 2 months ago
- Ploidy agnostic phasing pipeline and algorithm☆48Updated last year
- linearize and simplify variation graphs using blocked partial order alignment☆59Updated 3 months ago