ekg / HLA-zooView external linksLinks
genome variation graphs constructed from HLA GRCh38 ALTs
☆23Dec 24, 2021Updated 4 years ago
Alternatives and similar repositories for HLA-zoo
Users that are interested in HLA-zoo are comparing it to the libraries listed below
Sorting:
- Rust implementation of Flavia95's GFAtoVCF☆16Jan 17, 2022Updated 4 years ago
- Parallel Sequence to Graph Alignment☆36Nov 26, 2022Updated 3 years ago
- exploring viral genome assembly with variation graph tools☆20May 18, 2020Updated 5 years ago
- GFA visualizer, GPU-accelerated using Vulkan☆75Aug 2, 2022Updated 3 years ago
- ☆28Sep 28, 2024Updated last year
- Rust implementation of VG handle graph☆19Dec 18, 2023Updated 2 years ago
- For bluntifying overlapped GFAs☆13Jul 26, 2024Updated last year
- A read alignment visualization library for long reads☆10Aug 6, 2022Updated 3 years ago
- Library for the Handle Graph abstraction☆24Jan 15, 2026Updated last month
- nimble aligner that will map your reads to the references on a laptop☆11Jun 29, 2017Updated 8 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Feb 15, 2021Updated 5 years ago
- ☆18May 10, 2023Updated 2 years ago
- Population genetics analysis on VG☆17Apr 22, 2021Updated 4 years ago
- linearize and simplify variation graphs using blocked partial order alignment☆60Jul 22, 2025Updated 6 months ago
- ☆15Mar 9, 2018Updated 7 years ago
- Rust bindings to the wavefront algorithm C implementation☆17Sep 20, 2022Updated 3 years ago
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 4 years ago
- Generate interactive dotplot from mummer4 output using plotly☆27Feb 29, 2020Updated 5 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆37May 29, 2025Updated 8 months ago
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- ☆12Aug 23, 2023Updated 2 years ago
- GBWT in Rust☆45Dec 26, 2025Updated last month
- Multiple sequence alignment of long tandem repeats☆25Jan 9, 2026Updated last month
- ☆17Jan 5, 2021Updated 5 years ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆77Apr 30, 2021Updated 4 years ago
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated 8 months ago
- A varitation graph tool☆10Dec 23, 2019Updated 6 years ago
- GBWT-based handle graph☆31Updated this week
- alignment to variation graph inducer☆157Jan 20, 2026Updated 3 weeks ago
- Pan-genome Seed Index☆20Mar 12, 2025Updated 11 months ago
- Statistics and analysis for variation graphs☆49Dec 17, 2024Updated last year
- MONI: A Pangenomic Index for Finding MEMs☆37Mar 25, 2025Updated 10 months ago
- Reference-guided multiple sequence alignment of viral genomes☆70Nov 6, 2025Updated 3 months ago
- the we-flyin WFA-guided ultralong tiling sequence aligner☆10May 13, 2021Updated 4 years ago
- A toolkit for exploring regions of variation in pangenomes☆13Jan 30, 2026Updated 2 weeks ago
- CPANG19 - Computational PANGenomics (2019)☆12May 7, 2020Updated 5 years ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Mar 27, 2019Updated 6 years ago
- ☆11Aug 2, 2025Updated 6 months ago
- ☆101Apr 22, 2024Updated last year