pangenome / pggb-workshopLinks
tutorial on pggb
☆36Updated last year
Alternatives and similar repositories for pggb-workshop
Users that are interested in pggb-workshop are comparing it to the libraries listed below
Sorting:
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated last year
- BamDeal: a comprehensive toolkit for bam manipulation☆54Updated 3 years ago
- GENE-SWitCH project RNA-Seq analysis pipeline☆29Updated 10 months ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆34Updated 2 months ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆118Updated last month
- ☆31Updated 3 months ago
- MEGAnE☆33Updated 2 years ago
- perSVade: personalized Structural Variation detection☆40Updated 4 months ago
- Long Reads Annotation pipeline☆72Updated 3 years ago
- BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions☆39Updated 9 months ago
- Drosophila transposable element canonical sequences☆29Updated 3 years ago
- Scripting analyses of genomes in Ensembl Plants☆41Updated 2 weeks ago
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆56Updated last week
- scripts for the project of seven thaliana genomes assembly☆42Updated 4 years ago
- Extract longest transcript or longest CDS transcript from GTF annotation file or gencode transcripts fasta file.☆21Updated 3 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆46Updated 6 months ago
- iTAK☆48Updated last year
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆59Updated 2 years ago
- Transposable Elements MOvement detection using LOng reads☆25Updated 5 months ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆45Updated last year
- A pipeline for isoseq☆23Updated 7 years ago
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆29Updated 6 years ago
- Useful bioinformatic scripts☆58Updated last year
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆52Updated 4 months ago
- Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum☆17Updated 2 years ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69Updated 4 years ago
- LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.☆51Updated 2 years ago
- Pipeline to identify isoforms from full-length cDNA sequencing data☆26Updated 3 months ago