pangenome / pggb-workshopLinks
tutorial on pggb
☆35Updated 8 months ago
Alternatives and similar repositories for pggb-workshop
Users that are interested in pggb-workshop are comparing it to the libraries listed below
Sorting:
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions☆38Updated 5 months ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆27Updated 6 years ago
- GENE-SWitCH project RNA-Seq analysis pipeline☆29Updated 6 months ago
- BamDeal: a comprehensive toolkit for bam manipulation☆54Updated 2 years ago
- MEGAnE☆31Updated 2 years ago
- Simple library/pipeline to generate and handle Hi-C data.☆38Updated 9 months ago
- Transposable Elements MOvement detection using LOng reads☆22Updated last month
- Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum☆16Updated last year
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 8 months ago
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆56Updated 3 weeks ago
- Efficient Permutation-based GWAS for Normal and Skewed Phenotypic Distributions☆33Updated 10 months ago
- Structural variant merging tool☆54Updated last year
- scripts for the project of seven thaliana genomes assembly☆41Updated 4 years ago
- perSVade: personalized Structural Variation detection☆40Updated last week
- Long Reads Annotation pipeline☆72Updated 3 years ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆43Updated 10 months ago
- ☆30Updated 4 years ago
- python plotly Circos from VCF☆39Updated last year
- A Nextflow workflow to generate lift over files for any pair of genomes☆68Updated 3 months ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆108Updated 2 months ago
- A set of workflows written in Nextflow for Genome Annotation.☆45Updated last year
- ☆32Updated last month
- QTL-seq pipeline to identify causative mutations responsible for a phenotype☆57Updated 7 months ago
- ☆42Updated last year
- Same species annotation lift over pipeline.☆98Updated 2 years ago
- QTLseqr is an R package for QTL mapping using NGS Bulk Segregant Analysis☆80Updated 5 years ago
- Here, we sequence and de novo assemble chromosome-scale genomes of nine wild species and two cultivated accessions of tomato and construc…☆58Updated last year
- A (very) simple script to QC Hi-C data.☆26Updated 9 months ago