tutorial on pggb
☆40Jan 13, 2025Updated last year
Alternatives and similar repositories for pggb-workshop
Users that are interested in pggb-workshop are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Materials for genome annotation sessions at the WORKSHOP ON GENOMICS, CESKY KRUMLOV☆22Jan 19, 2026Updated 8 months ago
- Workshop on Genomics - Genomics Adventure☆47Jan 22, 2026Updated 8 months ago
- NLR annotation tool☆39Mar 6, 2024Updated 2 years ago
- Study of TE evolution in a population of genomes☆12Dec 11, 2023Updated 2 years ago
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Prefix-renaming FASTA records really fast.☆18Jun 26, 2024Updated 2 years ago
- ☆32Updated this week
- the pangenome graph builder☆519Jul 24, 2026Updated 2 months ago
- Dynamic Elongation of a Genome Assembly Path☆29Jul 27, 2026Updated 2 months ago
- ChIP-seq and ATAC-seq analysis☆13Jun 17, 2024Updated 2 years ago
- ☆16Apr 3, 2023Updated 3 years ago
- Tandem Repeats Finder: a program to analyze DNA sequences☆24Jul 30, 2025Updated last year
- Description Materials for Spring 2020 Applied Genomics Course☆16Apr 22, 2020Updated 6 years ago
- genome variation graphs constructed from HLA GRCh38 ALTs☆24Dec 24, 2021Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- The PanGenome Graph Builder☆17Jul 17, 2024Updated 2 years ago
- ☆15Apr 26, 2023Updated 3 years ago
- Transfer coordinates across genomes☆23Jun 12, 2026Updated 3 months ago
- Long read aligner for cyclic and acyclic pangenome graphs☆41Dec 20, 2023Updated 2 years ago
- ☆102Apr 22, 2024Updated 2 years ago
- Error correction of long reads☆16Jan 30, 2026Updated 8 months ago
- SRF: Satellite Repeat Finder☆110Jan 8, 2024Updated 2 years ago
- Neural network classification of TE☆103Apr 3, 2026Updated 6 months ago
- Easy genomic regions for short-read variant calling☆46Sep 10, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Linear-time de novo Long Read Assembler☆43Mar 19, 2026Updated 6 months ago
- Scripts used to perform analyses in Rice et al. (2023)☆16Dec 28, 2023Updated 2 years ago
- ☆43Oct 6, 2025Updated last year
- ☆13Oct 30, 2019Updated 6 years ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆25Feb 16, 2026Updated 7 months ago
- Identification of transposable element families from pangenome polymorphisms☆57Aug 11, 2026Updated last month
- ☆124Sep 29, 2026Updated last week
- a fork of the gap-closing pipeline PBJelly☆15Jan 7, 2019Updated 7 years ago
- ☆41Feb 22, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆38Apr 28, 2026Updated 5 months ago
- Resistify is a program which rapidly identifies and classifies plant NLR and PRR genes from protein sequences. It is designed to be light…☆51Jul 22, 2026Updated 2 months ago
- ☆11Aug 2, 2025Updated last year
- Code to create a PRG from a Multiple Sequence Alignment file☆25Sep 10, 2025Updated last year
- Constructing a pangenome gene graph☆212Aug 11, 2025Updated last year
- ☆24May 31, 2024Updated 2 years ago
- A novel genome assembly pipeline based on deep learning☆71Dec 2, 2024Updated last year