ChIP-seq and ATAC-seq analysis
☆13Jun 17, 2024Updated 2 years ago
Alternatives and similar repositories for chipseq
Users that are interested in chipseq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ChIP-seq peak-calling, QC and differential analysis pipeline (Snakemake port of the nextflow pipeline at https://nf-co.re/chipseq).☆26Feb 3, 2022Updated 4 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆26Nov 17, 2022Updated 3 years ago
- A DL-based framework for sequence and shape motif identification in the human genome☆12May 26, 2023Updated 3 years ago
- ☆16Feb 17, 2025Updated last year
- scRNA-seq workshop in Oxford on 9 September 2016☆11Sep 7, 2016Updated 9 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Python script for calling SNPs, MNPs, and indels in mitochondrial DNA.☆10Apr 19, 2016Updated 10 years ago
- ☆10Jan 30, 2020Updated 6 years ago
- ☆29Apr 20, 2019Updated 7 years ago
- Chipster is a user-friendly analysis software for high-throughput data.☆33Jun 18, 2021Updated 5 years ago
- RNAseq pipeline for alternative splicing junctions☆15Mar 26, 2026Updated 4 months ago
- CRISPR Indel, base edit analysis☆11Aug 1, 2020Updated 6 years ago
- tutorial on pggb☆38Jan 13, 2025Updated last year
- CHANGE-seq analysis pipeline☆12Dec 18, 2025Updated 7 months ago
- A comprehensive analysis tool for Ribo-seq and small RNA-seq data☆10Jun 22, 2020Updated 6 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆10Sep 11, 2020Updated 5 years ago
- Repository for the Epigenomics Tutorial hold at ISMB 2017 in Prague☆14Aug 19, 2020Updated 5 years ago
- Project Manager for NGS data analysis☆31Jul 10, 2026Updated 3 weeks ago
- Software developed at the Max Planck Institut für Eisenforschung☆13Jul 18, 2025Updated last year
- scRNA-seq Shiny App☆14May 1, 2023Updated 3 years ago
- A short tutorial to using DL and keras for genomics with sequence data.☆16Dec 3, 2020Updated 5 years ago
- Annotate Olfactory receptor CDS from genome☆11Apr 29, 2023Updated 3 years ago
- An unbiased method for genome-wide CBE off-targets assessment☆13Mar 9, 2023Updated 3 years ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆73Jul 18, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Efficient Sequential and Batch Estimation of Univariate and Bivariate Probability Density Functions and Cumulative Distribution Functions…☆17Aug 31, 2024Updated last year
- ☆18Jul 1, 2022Updated 4 years ago
- Calculates the Variant Allele Fraction of variants in VCF files☆19Nov 28, 2024Updated last year
- ☆17Sep 16, 2021Updated 4 years ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆29Sep 26, 2024Updated last year
- MASIC generates selected ion chromatograms (SICs) for all of the parent ions chosen for fragmentation in an LC-MS/MS analysis, characteri…☆18Dec 4, 2025Updated 8 months ago
- Script to automate differential expression analysis using DESeq2, edgeR or limma-voom☆20Aug 22, 2018Updated 7 years ago
- ☆17Feb 3, 2020Updated 6 years ago
- Digenome-toolkit ver2.☆15Nov 1, 2021Updated 4 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Pipeline for genome scaffolding by modelling distributions of HiC pairs☆12Dec 7, 2022Updated 3 years ago
- FLAME: Full Length Adjecency Matrix Enumeration - is a module that allows for the analysis of ONT Nanopore RNA long-read sequencing data.…☆12May 8, 2025Updated last year
- ☆13Nov 15, 2017Updated 8 years ago
- Accurate Machine Learning Based Germination Detection, Prediction and Quality Assessment of Different Seed Cultivars☆18Jul 24, 2023Updated 3 years ago
- Chromosome Scale Assembler: A high-throughput chromosome scale genome assembly pipeline for vertebrate genomes☆10Oct 16, 2024Updated last year
- Summer School 2019 - Functional Genomics☆20Jul 24, 2019Updated 7 years ago
- Workshop • Analysis of RNA-seq data☆38Mar 15, 2024Updated 2 years ago