Alternatives and similar repositories for chipseq

Users that are interested in chipseq are comparing it to the libraries listed below

• xuzhougeng / RNA-seq-downstream-analysis
  Arabidopsis RNA_-seq downstream analysis shiny app
  ☆30Updated 5 years ago
• compbiolabucf / AS-Quant
  Quantitation and visualization of differential alternative splicing events
  ☆10Updated 2 years ago
• xuzhougeng / R-ChIP-data-analysis
  ☆50Updated 6 years ago
• scottzijiezhang / m6A-seq_analysis_workflow
  A pipeline to process m6A-seq data and down stream analysis.
  ☆45Updated 4 years ago
• dekkerlab / cworld-dekker
  perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)
  ☆65Updated 6 years ago
• olarerin / metaPlotR
  A Perl/R pipeline for plotting metagenes
  ☆37Updated 3 years ago
• YaoLab-Bioinfo / shinyChromosome
  an R/Shiny application for interactive creation of non-circular plots of whole genomes
  ☆45Updated 2 months ago
• ay-lab / ATACProc
  ATAC-seq processing pipeline
  ☆33Updated 3 years ago
• yezhengSTAT / CUTTag_tutorial
  Tutorial Website
  ☆59Updated 4 years ago
• jmzeng1314 / my-perl
  some short but practical PERL script in NGS data analysis
  ☆16Updated 7 years ago
• junchaoshi / sports1.1
  Small non-coding RNA annotation Pipeline Optimized for rRNA- and tRNA-Derived Small RNAs
  ☆50Updated 6 months ago
• shawnzhangyx / cvdc_scripts
  scripts for analyzing the CVDC data.
  ☆19Updated 5 years ago
• marvin-jens / find_circ
  tools to find circRNAs in RNA-seq data
  ☆43Updated 7 years ago
• junjunlab / transPlotR
  An elegant package to visualize gene structures
  ☆78Updated 2 years ago
• dekkerlab / crane-nature-2015
  code associated with crane-nature-2015, 10.1038/nature14450
  ☆36Updated 9 years ago
• guoweilong / cgmaptools
  toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR
  ☆62Updated last year
• zhqingit / giremi
  GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.
  ☆44Updated 8 years ago
• OlgaVT / Alternative-Splicing-Tools
  A list of alternative splicing analysis resources
  ☆44Updated 3 months ago
• BioinfoUNIBA / REDItools2
  ☆58Updated 3 years ago
• yuanlizhanshi / NGS_Workflow
  Some NGS workflow created by snakemake
  ☆13Updated 6 months ago
• khuang28jhu / bs3
  BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.
  ☆27Updated 6 years ago
• guigolab / sQTLseekeR2
  R package to detect splicing QTLs (sQTLs)
  ☆12Updated 2 years ago
• menghaowei / ngstools
  My own tools code for NGS data analysis (Next Generation Sequencing)
  ☆30Updated 5 years ago
• junjunlab / BioSeqUtils
  Extract Sequence from Genome According to Annotation File
  ☆36Updated 3 months ago
• WGLab / LIQA
  Long-read Isoform Quantification and Analysis
  ☆38Updated 3 months ago
• tjbencomo / ngs-pipeline
  Pipeline for Somatic Variant Calling with WES and WGS data
  ☆21Updated last year
• nerettilab / RepEnrich2
  RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.
  ☆39Updated 3 years ago
• junjunlab / tackPlotR
  An R package to visualize bigwigs.
  ☆31Updated 3 years ago
• twlab / TEProf2Paper
  TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data
  ☆26Updated 2 years ago
• iprada / Circle-Map
  A method for circular DNA detection based on probabilistic mapping of ultrashort reads
  ☆64Updated last year