berthubert / antonie2
☆11Updated last year
Related projects ⓘ
Alternatives and complementary repositories for antonie2
- A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers☆21Updated 4 years ago
- For bluntifying overlapped GFAs☆13Updated 3 months ago
- Header-only, gzread-like reader for gzip, bz2, and xz.☆12Updated 6 years ago
- Minimizer-based assembly scaffolding and mapping using long reads☆31Updated last month
- nimble aligner that will map your reads to the references on a laptop☆12Updated 7 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Updated 3 years ago
- split a FASTA sequence file into shorter sequences☆10Updated 3 years ago
- A LaTeX package for drawing genetic construct pictograms using TikZ.☆9Updated 2 years ago
- ☆11Updated last year
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆11Updated 8 months ago
- Toolkit for manipulating FASTA and SAM files☆16Updated 7 months ago
- Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.☆15Updated 4 years ago
- Library for the Handle Graph abstraction☆21Updated 3 months ago
- An experimental tool to estimate the similarity between all pairs of contigs☆35Updated 3 years ago
- Command line tools for IntSpan related bioinformatics operations☆13Updated last week
- the we-flyin WFA-guided ultralong tiling sequence aligner☆11Updated 3 years ago
- A fast and space-efficient pre-filter for estimating the quantification of very large collections of nucleotide sequences☆14Updated this week
- multi-tool QC for minion data☆10Updated 6 years ago
- exploring viral genome assembly with variation graph tools☆19Updated 4 years ago
- Pan gGnome Viewer☆10Updated 9 months ago
- toolkit for file system virtualisation of random access compressed FASTA, FAI, DICT & TWOBIT files☆22Updated 2 months ago
- GBWT-based handle graph☆30Updated last week
- Set of tools for viral metagenomics.☆14Updated 11 months ago
- Universal K-mer Hitting Set library in Rust☆10Updated 4 years ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- Pipeline to evaluate pangenomes, e.g. from the variation it contains or how well reads map☆10Updated 2 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- find likely coding segments in DNA using composition-normalised hexamer tables☆14Updated 3 weeks ago