Alternatives and similar repositories for antonie2:

Users that are interested in antonie2 are comparing it to the libraries listed below

• samabs / conliga
  Probabilistic inference of somatic copy number alterations using repeat DNA (FAST-SeqS)
  ☆9Updated 6 years ago
• wang-q / intspan
  Command line tools for IntSpan related bioinformatics operations
  ☆13Updated 2 weeks ago
• kcleal / superintervals
  Fast interval intersection library
  ☆41Updated last month
• nextstrain / auspice.us
  ☆13Updated last week
• ocxtal / rbread
  Header-only, gzread-like reader for gzip, bz2, and xz.
  ☆12Updated 6 years ago
• roblanf / minion_multiQC
  multi-tool QC for minion data
  ☆9Updated 6 years ago
• vgteam / GetBlunted
  For bluntifying overlapped GFAs
  ☆13Updated 9 months ago
• edawson / svaha2
  Linear-time, low-memory construction of variation graphs
  ☆20Updated 5 years ago
• edawson / svaha
  Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]
  ☆12Updated last year
• ocxtal / dozeu
  SIMD-parallel BLAST X-drop DP on sequence graphs
  ☆24Updated 10 months ago
• rchikhi / rust-alignbench
  Pairwise nucleotide alignment benchmark of Rust bindings
  ☆31Updated last year
• edawson / mkmh
  Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.
  ☆24Updated 4 years ago
• mklarqvist / libflagstats
  Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.
  ☆15Updated 5 years ago
• chfi / waragraph
  ☆27Updated last year
• lynxoid / nimbliner
  nimble aligner that will map your reads to the references on a laptop
  ☆12Updated 7 years ago
• NCBI-Codeathons / SWIGG
  A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers
  ☆22Updated 5 years ago
• seqan / needle
  A fast and space-efficient pre-filter for estimating the quantification of very large collections of nucleotide sequences
  ☆14Updated last week
• MoinSebi / gSV
  ☆11Updated 2 years ago
• bioinfologics / sdg
  Sequence Distance Graph framework: graph + reads + mapping + analysis
  ☆25Updated 2 years ago
• Picani / fastax
  Make phylogenetic trees and lineages from the NCBI Taxonomy database
  ☆13Updated 2 years ago
• kdm9 / hail
  Hail: extract lines from a file, a la `head -n x | tail -n y`
  ☆9Updated 4 years ago
• jltsiren / gbwtgraph
  GBWT-based handle graph
  ☆31Updated last month
• yhoogstrate / fastafs
  toolkit for file system virtualisation of random access compressed FASTA, FAI, DICT & TWOBIT files
  ☆22Updated 8 months ago
• jslfree080 / bamscope
  A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)
  ☆10Updated last year
• vgteam / libhandlegraph
  Library for the Handle Graph abstraction
  ☆23Updated last month
• adigenova / fast-sg
  Fast-SG: An alignment-free algorithm for ultrafast scaffolding graph construction from short or long reads.
  ☆22Updated 6 years ago
• mpinese / nimpress
  Polygenic score calculation from VCF in Nim.
  ☆15Updated 4 years ago
• prophyle / prophasm
  ProphAsm – a rapid computation of simplitigs directly from k-mer sets
  ☆26Updated 2 years ago
• annalam / seqkit
  Toolkit for manipulating FASTA and SAM files
  ☆18Updated last year
• rvaser / bioparser
  C++ library for parsing several formats in bioinformatics
  ☆9Updated last year