Alternatives and similar repositories for rpvg:

Users that are interested in rpvg are comparing it to the libraries listed below

• ksahlin / isONcorrect
  Error correction of ONT transcript reads
  ☆59Updated last year
• PacificBiosciences / HiFiCNV
  Copy number variant caller and depth visualization utility for PacBio HiFi reads
  ☆40Updated 4 months ago
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 4 years ago
• Gabaldonlab / perSVade
  perSVade: personalized Structural Variation detection
  ☆38Updated this week
• micahvista / VACmap
  VACmap: a long-read aligner specifically designed for complex structural variation discovery
  ☆33Updated 3 months ago
• DecodeGenetics / svimmer
  Structural variant merging tool
  ☆49Updated 6 months ago
• mchowdh200 / samplot-ml
  ☆22Updated 3 years ago
• 0xTCG / biser
  A fast tool for detecting and decomposing segmental duplications in genome assemblies
  ☆46Updated last year
• rrazaghi / modbamtools
  Set of tools to manipulate and visualize modified base bam files
  ☆50Updated 2 years ago
• epi2me-labs / wf-pore-c
  ☆37Updated 2 weeks ago
• adamewing / tldr
  Identify and annotate TE-mediated insertions in long-read sequence data
  ☆41Updated last year
• tanghaibao / allhic
  Genome scaffolding based on HiC data in heterozygous and high ploidy genomes
  ☆59Updated 2 months ago
• vahidAK / NanoMethPhase
  Methylation Phasing for Nanopore Sequencing
  ☆46Updated last year
• PacificBiosciences / MethBat
  A battery of methylation tools for PacBio HiFi reads
  ☆31Updated 2 months ago
• EichlerLab / smrtsv2
  Structural variant caller
  ☆54Updated 3 years ago
• timplab / nanopore-methylation-utilities
  ☆29Updated 4 years ago
• yeeus / GCI
  A program for assessing the T2T genome continuity
  ☆65Updated 2 months ago
• BGI-Qingdao / stlfr2supernova_pipeline
  A pipeline to de novo assemble the stLFR reads using Supernova Assembler
  ☆20Updated 2 years ago
• PacificBiosciences / pb-human-wgs-workflow-snakemake
  DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads
  ☆38Updated last year
• phyloacc / PhyloAcc
  PhyloAcc a software to detect the changes of conservation of a genomic region
  ☆29Updated 4 months ago
• Nextomics / pipeline-for-isoseq
  A pipeline for isoseq
  ☆23Updated 6 years ago
• zeeev / smartie-sv
  calling SVs from Blasr contig level alignments
  ☆54Updated 6 years ago
• TF-Chan-Lab / panGraphViewer
  Show pangenome graphs in an easy way
  ☆55Updated 2 years ago
• ENCODE-DCC / long-read-rna-pipeline
  ENCODE long read RNA-seq pipeline
  ☆45Updated 2 years ago
• daewoooo / SVbyEye
  ☆76Updated this week
• kage-genotyper / kage
  Alignment-free genotyper for SNPs and short indels, implemented in Python.
  ☆48Updated 5 months ago
• Kuanhao-Chao / LiftOn
  🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
  ☆73Updated this week
• PacificBiosciences / sv-benchmark
  Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data
  ☆48Updated 4 years ago
• lh3 / minipileup
  Simple pileup-based variant caller
  ☆87Updated last week
• ISUgenomics / SequelTools
  new repo
  ☆28Updated 3 years ago