jonassibbesen / rpvgLinks
Method for inferring path posterior probabilities and abundances from pangenome graph read alignments
☆56Updated 6 months ago
Alternatives and similar repositories for rpvg
Users that are interested in rpvg are comparing it to the libraries listed below
Sorting:
- perSVade: personalized Structural Variation detection☆40Updated last week
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆49Updated 4 months ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Error correction of ONT transcript reads☆58Updated last year
- EndHic is a fast and easy-to-use Hi-C scaffolding tool, using the Hi-C links from contig end regions instead of whole contig regions to a…☆23Updated 2 years ago
- ☆76Updated 5 years ago
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago
- Show pangenome graphs in an easy way☆56Updated 2 years ago
- Integrate multiple genome assemblies into a pangenome graph☆34Updated 3 years ago
- ☆31Updated last year
- A battery of methylation tools for PacBio HiFi reads☆38Updated last month
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆30Updated 2 months ago
- GENE-SWitCH project RNA-Seq analysis pipeline☆28Updated 5 months ago
- ☆42Updated last year
- ☆31Updated 11 months ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆43Updated last month
- A pipeline for isoseq☆23Updated 7 years ago
- Structural variant merging tool☆52Updated 10 months ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆68Updated last month
- Variant annotation and merging pipeline☆37Updated last month
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Updated last year
- Computational Analysis of Gene Expression Evolution☆43Updated last week
- ☆36Updated last week
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆36Updated last year
- A gene fusion caller for long-read transcriptome sequencing data.☆19Updated last year
- This toolkit deals with GEnomic sequence and genome structure ANnotation files between inbreeding lines and species.☆45Updated 2 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 6 months ago
- Materials for Spring 2021 Applied Genomics Course☆53Updated 4 years ago
- Snakemake pipeline to analyze transposable element 'omics data.☆27Updated this week
- ☆48Updated last year