NLR annotation tool
☆35Mar 6, 2024Updated 2 years ago
Alternatives and similar repositories for NLRtracker
Users that are interested in NLRtracker are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Package to Draw NLR Domain Architecture using NLRtracker Output☆16Jul 30, 2021Updated 4 years ago
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆43Updated this week
- We report a section-wide NLRome for the tuber-bearing section Petota, including the most important non-cereal food crop potato. Evolution…☆19Oct 31, 2025Updated 5 months ago
- NLR-Annotator upload☆76Jul 19, 2023Updated 2 years ago
- Annotation Pipeline for NLR genes☆16Dec 6, 2018Updated 7 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Scripts to do haplotype analysis on pan genomes.☆20Sep 24, 2020Updated 5 years ago
- The full-length Homology-based R-gene Prediction (HRP) pipeline to comprehensively identify full-length NB-LRR gene models within genome …☆11Jul 27, 2023Updated 2 years ago
- Convert GFF file to GenBank file format while extracting the sequences between the annotated regions☆14Sep 6, 2023Updated 2 years ago
- tutorial on pggb☆37Jan 13, 2025Updated last year
- ☆14Nov 4, 2024Updated last year
- ☆29Aug 7, 2025Updated 8 months ago
- Scripting analyses of genomes in Ensembl Plants☆42Jan 1, 2026Updated 3 months ago
- PLLaMA: an Open-source Large Language Model for Plants☆33Jan 29, 2024Updated 2 years ago
- trackc aims to produce beautiful genome tracks that are highly customizable☆18Jan 21, 2026Updated 2 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Differential coexpression analysis☆17Aug 9, 2023Updated 2 years ago
- Java software to analyse phylogeny-trait correlations in discrete traits, accounting for phylogenetic uncertainty via posterior sampling.☆12Sep 26, 2017Updated 8 years ago
- ☆18Jan 29, 2025Updated last year
- SV calling for diploid assemblies☆31Mar 22, 2024Updated 2 years ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- This is a read-only mirror of the CRAN R package repository. rrBLUP — Ridge Regression and Other Kernels for Genomic Selection. Homepag…☆14Dec 11, 2023Updated 2 years ago
- DNA序列比对结果 可视化展示工具☆58Dec 18, 2022Updated 3 years ago
- ☆18Jun 14, 2025Updated 10 months ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆20Feb 13, 2026Updated 2 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 8 months ago
- A Shiny App for Interactive RNAseq Analysis and Visualization☆15Aug 6, 2024Updated last year
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆15Apr 22, 2024Updated last year
- Chromosome-scale and haplotype-resolved assmebly of tetraploid cultiavetd potato with polyploidy graph binning☆28Aug 14, 2024Updated last year
- Neural network classification of TE☆98Apr 3, 2026Updated last week
- Find Unique genomic Regions☆32Mar 18, 2026Updated 3 weeks ago
- Genome haplotype assembly and assessment method☆12Nov 24, 2023Updated 2 years ago
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 5 months ago
- Identification of conserved non-coding sequences in plants☆38Updated this week
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Parallel implementation of OrthoMCL☆21Aug 26, 2022Updated 3 years ago
- ☆13Nov 13, 2023Updated 2 years ago
- Extracting paths from assembly graphs☆24Apr 26, 2024Updated last year
- Deep learning library for biological sequences. Extension of Fastai and Pytorch.☆39May 30, 2025Updated 10 months ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 5 months ago
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆18Jun 6, 2019Updated 6 years ago
- Rust implementation of Flavia95's GFAtoVCF☆16Jan 17, 2022Updated 4 years ago