NLR annotation tool
☆39Mar 6, 2024Updated 2 years ago
Alternatives and similar repositories for NLRtracker
Users that are interested in NLRtracker are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Package to Draw NLR Domain Architecture using NLRtracker Output☆16Jul 30, 2021Updated 5 years ago
- Resistify is a program which rapidly identifies and classifies plant NLR and PRR genes from protein sequences. It is designed to be light…☆51Jul 22, 2026Updated 2 months ago
- NLR-Annotator upload☆77Jul 19, 2023Updated 3 years ago
- We report a section-wide NLRome for the tuber-bearing section Petota, including the most important non-cereal food crop potato. Evolution…☆23Oct 31, 2025Updated 10 months ago
- Annotation Pipeline for NLR genes☆17Dec 6, 2018Updated 7 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Scripts to do haplotype analysis on pan genomes.☆20Sep 24, 2020Updated 6 years ago
- Convert GFF file to GenBank file format while extracting the sequences between the annotated regions☆14Sep 6, 2023Updated 3 years ago
- The full-length Homology-based R-gene Prediction (HRP) pipeline to comprehensively identify full-length NB-LRR gene models within genome …☆11Jul 27, 2023Updated 3 years ago
- tutorial on pggb☆39Jan 13, 2025Updated last year
- ☆13Nov 4, 2024Updated last year
- Scripting analyses of genomes in Ensembl Plants☆45Apr 22, 2026Updated 5 months ago
- Differential coexpression analysis☆17Aug 9, 2023Updated 3 years ago
- PLLaMA: an Open-source Large Language Model for Plants☆34Jan 29, 2024Updated 2 years ago
- ☆18Jan 29, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Java software to analyse phylogeny-trait correlations in discrete traits, accounting for phylogenetic uncertainty via posterior sampling.☆14Sep 26, 2017Updated 9 years ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- This is a read-only mirror of the CRAN R package repository. rrBLUP — Ridge Regression and Other Kernels for Genomic Selection. Homepag…☆14Dec 11, 2023Updated 2 years ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated last year
- DNA序列比对结果 可视化展示工具☆58Dec 18, 2022Updated 3 years ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆23Aug 12, 2026Updated last month
- ☆13Nov 13, 2023Updated 2 years ago
- ☆30Aug 7, 2025Updated last year
- Chromosome-scale and haplotype-resolved assmebly of tetraploid cultiavetd potato with polyploidy graph binning☆29Aug 14, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆16Apr 22, 2024Updated 2 years ago
- trackc aims to produce beautiful genome tracks that are highly customizable☆19Jun 6, 2026Updated 3 months ago
- Find Unique genomic Regions☆34Sep 8, 2026Updated 2 weeks ago
- Genome haplotype assembly and assessment method☆12Nov 24, 2023Updated 2 years ago
- Neural network classification of TE☆103Apr 3, 2026Updated 5 months ago
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 10 months ago
- Extracting paths from assembly graphs☆26Jun 22, 2026Updated 3 months ago
- TrGP aims to get knowledge from the source task's learning system to improve the target genomic prediction (GP) task.☆14Dec 12, 2023Updated 2 years ago
- A Shiny App for Interactive RNAseq Analysis and Visualization☆15May 14, 2026Updated 4 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- SV calling for diploid assemblies☆32Mar 22, 2024Updated 2 years ago
- ☆13Oct 30, 2019Updated 6 years ago
- The aim of this repository is to provide simple tools to help those working with ColabFold BATCH both for pre and post-processing steps.☆17Jan 29, 2024Updated 2 years ago
- Parallel implementation of OrthoMCL☆21Aug 26, 2022Updated 4 years ago
- Materials for genome annotation sessions at the WORKSHOP ON GENOMICS, CESKY KRUMLOV☆22Jan 19, 2026Updated 8 months ago
- ☆25Updated this week
- ☆10Mar 4, 2025Updated last year