Alternatives and similar repositories for pggb-paper

Users that are interested in pggb-paper are comparing it to the libraries listed below

• dubssieg / pancat
  Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions
  ☆36Updated 7 months ago
• gatech-genemark / GeneMark-ETP
  GeneMark-ETP: gene finding in eukaryotic genomes supported by transcriptome sequencing and protein homology
  ☆26Updated 8 months ago
• zstephens / telogator2
  A method for measuring allele-specific telomere length and characterizing telomere variant repeat sequences from long reads.
  ☆22Updated 2 weeks ago
• aljpetri / isONform
  De novo construction of isoforms from long-read data
  ☆35Updated 6 months ago
• MBaysanLab / vcf-observer
  VCF Observer is a VCF file analysis, comparison, and visualization tool.
  ☆18Updated 11 months ago
• bcgsc / goldrush
  Linear-time de novo Long Read Assembler
  ☆41Updated last month
• bcgsc / physlr
  Construct a Physical Map from Linked Reads
  ☆18Updated last year
• GonzalezLab / MCHelper
  MCHelper: An automatic tool to curate transposable element libraries
  ☆45Updated 5 months ago
• csoderlund / SyMAP
  Synteny Mapping and Analysis Program
  ☆29Updated this week
• fawaz-dabbaghieh / bubble_gun
  ☆41Updated last week
• ComparativeGenomicsToolkit / hal2vg
  Convert HAL to VG
  ☆23Updated last year
• mkpython3 / Mutation-Simulator
  A tool for simulating random mutations in any genome
  ☆43Updated last year
• dvdylus / read2tree
  ☆20Updated 3 years ago
• lemene / PECAT
  PECAT, a phased error correct and assembly tool
  ☆56Updated 2 weeks ago
• ShunOuchi / GreenHill
  De novo chromosome-level scaffolding and phasing tool using Hi-C
  ☆29Updated 3 weeks ago
• DrMicrobit / mira
  MIRA sequence assembler
  ☆30Updated 11 months ago
• LuoGroup2023 / DeChat
  Repeat and haplotype aware error correction in nanopore sequencing reads with DeChat
  ☆25Updated 7 months ago
• MatteoSchiavinato / all2vcf
  Toolkit to convert the output of common variant calling programs to VCF
  ☆23Updated 3 years ago
• pangenome / maffer
  extract MSAs from genome variation graphs
  ☆34Updated 5 years ago
• nf-core / genomeannotator
  Pipeline for the identification of (coding) gene structures in draft genomes.
  ☆31Updated last year
• at-cg / mm2-plus
  Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)
  ☆36Updated 2 weeks ago
• SouthGreenPlatform / VcfHunter
  VcfExplorer regroups several programs which principal aims are to map DNA and RNAseq data onto reference genome sequence, perform variant…
  ☆15Updated last year
• IGDRion / ANNEXA
  Nextflow pipeline to extend reference annotation with nanopore reads, classify novel genes (mRNAs vs lncRNAs).
  ☆16Updated 2 weeks ago
• rchikhi / 2022-pangenome-graphs-intro
  ☆28Updated last year
• SunPengChuan / wgdi-example
  ☆20Updated this week
• RolandFaure / Hairsplitter
  Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.
  ☆35Updated 7 months ago
• a-ludi / dentist
  Close assembly gaps using long-reads at high accuracy.
  ☆49Updated last year
• warp9seq / minimod
  A bioinformatics tool for viewing and calculating base modification frequencies from BAM files
  ☆40Updated last week
• asylvz / SVarp
  Phased structural variant discovery in pangenomes
  ☆39Updated last week
• bcgsc / ntLink
  Minimizer-based assembly scaffolding and mapping using long reads
  ☆44Updated last year