The PanGenome Graph Builder
☆16Jul 17, 2024Updated last year
Alternatives and similar repositories for pggb-paper
Users that are interested in pggb-paper are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A toolkit for exploring regions of variation in pangenomes☆14Feb 14, 2026Updated last month
- Test sets and pipeline scripts for pan-genomic graph analysis☆17Jan 30, 2025Updated last year
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 5 months ago
- lace up GFA files using panSN path name sub-ranges to coordinate the lacing☆14Jul 30, 2025Updated 7 months ago
- A short tandem repeat (STR) genotyping and analysis toolkit for long reads☆18Updated this week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- a nextflow pipeline for creating a pangenome with minigraph-cactus☆16Sep 13, 2024Updated last year
- Rust implementation of VG handle graph☆19Dec 18, 2023Updated 2 years ago
- Optimized sequence graph implementations for graph genomics☆34Updated this week
- Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…☆26Mar 11, 2026Updated 2 weeks ago
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆36May 14, 2025Updated 10 months ago
- implicit pangenome graph☆98Updated this week
- ☆18Jan 29, 2025Updated last year
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated last year
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆23Feb 16, 2026Updated last month
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Variational Auto Encoders for learning binding signatures of transcription factors☆14Mar 14, 2024Updated 2 years ago
- memory mapped multimap, multiset, and implicit interval tree based on an in-place parallel sort☆27Jan 25, 2021Updated 5 years ago
- RDF and SPARQL ideas to build on top of [odgi](https://github.com/pangenome/odgi)☆13Mar 20, 2024Updated 2 years ago
- PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium☆12Apr 5, 2025Updated 11 months ago
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated last year
- GBWT-based handle graph☆31Mar 17, 2026Updated last week
- genome variation graphs constructed from HLA GRCh38 ALTs☆23Dec 24, 2021Updated 4 years ago
- ☆13Dec 3, 2024Updated last year
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- pangenome from maximal blocks in an MSA☆11Sep 17, 2024Updated last year
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆59Sep 6, 2025Updated 6 months ago
- High Performance Sorting Based Distributed memory K-mer counter☆15Dec 8, 2025Updated 3 months ago
- the pangenome graph evaluator☆29Apr 12, 2021Updated 4 years ago
- Rust bindings to the wavefront algorithm C implementation☆17Sep 20, 2022Updated 3 years ago
- Rust implementation of Flavia95's GFAtoVCF☆16Jan 17, 2022Updated 4 years ago
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- GFA parser in Rust☆30May 26, 2023Updated 2 years ago
- ☆29Aug 7, 2025Updated 7 months ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- linearize and simplify variation graphs using blocked partial order alignment☆61Feb 25, 2026Updated last month
- ☆20Apr 15, 2024Updated last year
- convert CHAIN format to PAF format☆15Dec 17, 2024Updated last year
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 7 months ago
- ☆19Feb 15, 2025Updated last year
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆37May 29, 2025Updated 10 months ago
- Tandem Repeats Finder: a program to analyze DNA sequences☆22Jul 30, 2025Updated 7 months ago