pangenome / pggb-paperLinks
The PanGenome Graph Builder
☆15Updated 10 months ago
Alternatives and similar repositories for pggb-paper
Users that are interested in pggb-paper are comparing it to the libraries listed below
Sorting:
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆34Updated 3 weeks ago
- De novo construction of isoforms from long-read data☆28Updated 6 months ago
- A method for measuring allele-specific telomere length and characterizing telomere variant repeat sequences from long reads.☆18Updated 2 weeks ago
- Minimizer-based assembly scaffolding and mapping using long reads☆42Updated 7 months ago
- GeneMark-ETP: gene finding in eukaryotic genomes supported by transcriptome sequencing and protein homology☆22Updated last month
- VCF Observer is a VCF file analysis, comparison, and visualization tool.☆17Updated 5 months ago
- Construct a Physical Map from Linked Reads☆18Updated last year
- A Generative Pre-Trained Transformer Package for Pangenomes☆51Updated 2 weeks ago
- PECAT, a phased error correct and assembly tool☆51Updated 2 weeks ago
- extract MSAs from genome variation graphs☆33Updated 4 years ago
- ☆41Updated last month
- Nextflow pipeline to extend reference annotation with nanopore reads, classify novel genes (mRNAs vs lncRNAs).☆13Updated 2 weeks ago
- Pipeline for the identification of (coding) gene structures in draft genomes.☆28Updated last year
- MCHelper: An automatic tool to curate transposable element libraries☆36Updated last month
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated last year
- GRAph-based Finding of Individual Motif Occurrences☆31Updated 9 months ago
- Convert HAL to VG☆22Updated 9 months ago
- Clair3-Trio: variant calling in trio using Nanopore long-reads☆15Updated last year
- A Nextflow pipeline for evaluating assembly quality☆34Updated last week
- Detecting multi-genome synteny using minimizer graph mapping☆78Updated last month
- Linear-time de novo Long Read Assembler☆40Updated 4 months ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆14Updated 2 years ago
- ☆17Updated last year
- ☆28Updated 3 weeks ago
- PhyloSD: Phylogenomic Subgenome Detection pipeline☆11Updated 2 years ago
- This is the Haplotypo repository☆20Updated last year
- VcfExplorer regroups several programs which principal aims are to map DNA and RNAseq data onto reference genome sequence, perform variant…☆14Updated last year
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆32Updated last month
- convert variation graph alignments to coverage maps over nodes☆24Updated 4 months ago
- A tool for simulating random mutations in any genome☆38Updated last year