Alternatives and similar repositories for pggb-paper:

Users that are interested in pggb-paper are comparing it to the libraries listed below

• MBaysanLab / vcf-observer
  VCF Observer is a VCF file analysis, comparison, and visualization tool.
  ☆17Updated 3 months ago
• zstephens / telogator2
  A method for measuring allele-specific telomere length and characterizing telomere variant repeat sequences from long reads.
  ☆15Updated last week
• dubssieg / pancat
  Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions
  ☆32Updated 3 weeks ago
• gatech-genemark / GeneMark-ETP
  GeneMark-ETP: gene finding in eukaryotic genomes supported by transcriptome sequencing and protein homology
  ☆21Updated 2 weeks ago
• pangenome / maffer
  extract MSAs from genome variation graphs
  ☆33Updated 4 years ago
• pangenome / HPRCyear1v2genbank
  building a human pangenome from the HPRCy1v2 genbank accessioned assemblies
  ☆14Updated 2 years ago
• bcgsc / physlr
  Construct a Physical Map from Linked Reads
  ☆18Updated last year
• fawaz-dabbaghieh / bubble_gun
  ☆41Updated this week
• human-pangenomics / hprc-tutorials
  ☆17Updated last year
• ComparativeGenomicsToolkit / hal2vg
  Convert HAL to VG
  ☆22Updated 8 months ago
• ComparativeGenomicsToolkit / taffy
  This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files
  ☆26Updated 4 months ago
• mol-evol / panGPT
  A Generative Pre-Trained Transformer Package for Pangenomes
  ☆50Updated 11 months ago
• dvdylus / read2tree
  ☆20Updated 3 years ago
• aljpetri / isONform
  De novo construction of isoforms from long-read data
  ☆26Updated 5 months ago
• Gabaldonlab / haplotypo
  This is the Haplotypo repository
  ☆20Updated 11 months ago
• IGDRion / ANNEXA
  Nextflow pipeline to extend reference annotation with nanopore reads, classify novel genes (mRNAs vs lncRNAs).
  ☆13Updated 2 weeks ago
• PacificBiosciences / svpack
  Structural variant (SV) analysis tools
  ☆36Updated 9 months ago
• RolandFaure / Hairsplitter
  Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.
  ☆34Updated this week
• pinellolab / GRAFIMO
  GRAph-based Finding of Individual Motif Occurrences
  ☆31Updated 7 months ago
• bacpop / pp-sketchlib
  Library of sketching functions used by PopPUNK
  ☆30Updated 3 weeks ago
• marschall-lab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆36Updated last month
• enormandeau / snplift
  Transfer coordinates across genomes
  ☆23Updated 2 weeks ago
• marschall-lab / gaftools
  General purpose utility related to GAF files
  ☆24Updated last week
• LuoGroup2023 / DeChat
  Repeat and haplotype aware error correction in nanopore sequencing reads with DeChat
  ☆17Updated 10 months ago
• nanoporetech / DTR-phage-pipeline
  ☆16Updated last year
• Plant-Food-Research-Open / assemblyqc
  A Nextflow pipeline for evaluating assembly quality
  ☆33Updated 3 weeks ago
• mrvollger / NucFreq
  ☆35Updated last year
• agshumate / LiftoffTools
  ☆26Updated last year
• GonzalezLab / MCHelper
  MCHelper: An automatic tool to curate transposable element libraries
  ☆36Updated 2 weeks ago
• nf-core / genomeannotator
  Pipeline for the identification of (coding) gene structures in draft genomes.
  ☆27Updated 11 months ago