enormandeau / snplift
Transfer coordinates across genomes
☆23Updated 8 months ago
Alternatives and similar repositories for snplift:
Users that are interested in snplift are comparing it to the libraries listed below
- A high performance tool to identify orthologs and paralogs across genomes.☆26Updated last year
- Improved Phased Assembler☆28Updated 2 years ago
- ☆32Updated 4 years ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆38Updated 3 weeks ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆34Updated 2 months ago
- Assembly by Reduced Complexity (ARC)☆41Updated 8 years ago
- R-package: Calculation of haplotype blocks and libraries☆30Updated 11 months ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- scripts to parse and analyse MCScanX collinearity output☆30Updated 4 years ago
- Compute N50/NG50 and auN/auNG☆31Updated last year
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆48Updated 3 weeks ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆31Updated 2 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆35Updated last month
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 4 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆56Updated last week
- ☆20Updated 2 years ago
- assembly evaluation tool☆34Updated 2 years ago
- A tool for recovering synteny blocks from multiple alignment☆29Updated 3 years ago
- Genome assembly soft-masking using Red (REpeat Detector)☆16Updated 6 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆47Updated 5 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆33Updated last year
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆36Updated 3 months ago
- General purpose population genetics software☆12Updated 5 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- ☆22Updated 10 months ago
- ☆28Updated 2 years ago
- STAG: Species Tree from All Genes☆33Updated 6 years ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆22Updated 2 years ago
- Gene model transfer from closely related reference genomes using cDNA alignments☆10Updated 4 years ago