enormandeau / snpliftView external linksLinks
Transfer coordinates across genomes
☆23May 23, 2025Updated 8 months ago
Alternatives and similar repositories for snplift
Users that are interested in snplift are comparing it to the libraries listed below
Sorting:
- Genome assembly soft-masking using Red (REpeat Detector)☆18Dec 7, 2018Updated 7 years ago
- ClaMSA (Classify Multiple Sequence Alignments).☆13Nov 21, 2024Updated last year
- Refinements of the WFA alignment algorithm with better complexity☆26Mar 31, 2022Updated 3 years ago
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆34Jul 27, 2025Updated 6 months ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆36Jan 7, 2026Updated last month
- Scrooge is a high-performance pairwise sequence aligner based on the GenASM algorithm. Scrooge includes three novel algorithmic improveme…☆38Jun 23, 2023Updated 2 years ago
- ☆21Oct 2, 2024Updated last year
- The MafFilter genome alignment processor☆19Jan 6, 2026Updated last month
- An R HTMLWidget for making interactive manhattan plots for GWAS.☆20Aug 1, 2015Updated 10 years ago
- 🪡Correct and scaffold assemblies using long reads☆57Sep 4, 2025Updated 5 months ago
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- Linear-time de novo Long Read Assembler☆41Oct 22, 2025Updated 3 months ago
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆12Jun 13, 2025Updated 8 months ago
- A rust wrapper for the spoa C++ partial order alignment library☆10Jun 11, 2025Updated 8 months ago
- Finding patch of conserved amino acid sites in 3D structure☆13Apr 13, 2025Updated 10 months ago
- pangenome from maximal blocks in an MSA☆11Sep 17, 2024Updated last year
- Lesson for the shell for genomics☆10Jan 12, 2021Updated 5 years ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 3 months ago
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Apr 29, 2021Updated 4 years ago
- ☆10Apr 16, 2025Updated 9 months ago
- Homologizer: phasing gene copies into polyploid subgenomes☆11Feb 3, 2026Updated last week
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated 8 months ago
- Scaffolding of genomic assemblies with RNA seq data☆15Oct 8, 2015Updated 10 years ago
- ☆10May 22, 2025Updated 8 months ago
- Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assemblies☆12Jun 30, 2023Updated 2 years ago
- consensus approach for community profiling with nanopore amplicon sequencing data☆15Sep 30, 2024Updated last year
- A Generative Pre-Trained Transformer Package for Pangenomes☆53May 19, 2025Updated 8 months ago
- Genome Annotation Without Nightmares☆46Feb 2, 2026Updated last week
- Hybrid Error Correction of Long Reads using Iterative Learning☆10Sep 27, 2018Updated 7 years ago
- ☆12Dec 12, 2014Updated 11 years ago
- ☆10Dec 28, 2023Updated 2 years ago
- Versatile tool for detecting selective sweeps with a variety of ages, strengths, starting allele frequencies, and completeness.☆15Mar 1, 2024Updated last year
- Rapid discovery of reciprocal best blast pairs.☆10Nov 9, 2024Updated last year
- CPANG19 - Computational PANGenomics (2019)☆12May 7, 2020Updated 5 years ago
- TEFLoN uses paired-end illumina sequence data to discover and genotype transposable elements present in your samples.☆13Mar 5, 2021Updated 4 years ago
- A procedure to find Fst outliers based on an inferred distribution of neutral Fst☆19Aug 26, 2019Updated 6 years ago
- A Nextflow pipeline for genome and pan-genome annotation☆15Feb 3, 2026Updated last week
- Nextflow pipeline to extend reference annotation with nanopore reads, classify novel genes (mRNAs vs lncRNAs).☆16Jan 20, 2026Updated 3 weeks ago
- QTL Discovery using Annotations☆28Dec 12, 2022Updated 3 years ago