krasileva-group / plant_rgenesLinks
☆13Updated 5 years ago
Alternatives and similar repositories for plant_rgenes
Users that are interested in plant_rgenes are comparing it to the libraries listed below
Sorting:
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago
- scripts for the project of seven thaliana genomes assembly☆38Updated 4 years ago
- A shiny application to visualize MCscan result☆36Updated 2 years ago
- ☆25Updated 3 months ago
- An R package to infer and analyze synteny networks from protein sequences☆30Updated 5 months ago
- ☆25Updated 2 years ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆26Updated 2 months ago
- kmerfreq count K-mer (with size K) frequency from the input sequence data, typically sequencing reads data, and refe rence genome data is…☆17Updated 5 years ago
- R package to draw syntenic plots in 3 different styles☆41Updated last year
- Computational Analysis of Gene Expression Evolution☆41Updated last week
- read and analyse RepeatMasker output☆24Updated 2 years ago
- ☆27Updated 5 months ago
- BITACORA: A Bioinformatics tool for gene family annotation☆45Updated this week
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- Chromosome-level synteny plotting using orthologous regions☆29Updated 8 months ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆33Updated last year
- meta-pipeline for repetitive element de-fragmentation and annotation☆24Updated 4 years ago
- ☆21Updated 5 years ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆40Updated 8 months ago
- Genome Annotation Pipeline☆35Updated 9 months ago
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆28Updated 4 years ago
- Likelihood-based Selective Sweep Detection☆37Updated last year
- PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics☆35Updated 2 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆27Updated 3 years ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- A pipeline for isoseq☆23Updated 7 years ago
- ☆32Updated 4 years ago
- Codes for the lettuce resequencing project in 2020☆30Updated 3 years ago
- A tool for performing collinearity-incorporating homology inference☆32Updated last year