Alternatives and similar repositories for plant_rgenes:

Users that are interested in plant_rgenes are comparing it to the libraries listed below

• obenno / ShinySyn
  A shiny application to visualize MCscan result
  ☆34Updated 2 years ago
• dePamphilis / PlantTribes
  PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics
  ☆35Updated last year
• eswlab / orphan-prediction
  methods for orphan gene prediction paper optimization
  ☆25Updated 3 years ago
• molevol-ub / bitacora
  BITACORA: A Bioinformatics tool for gene family annotation
  ☆44Updated 9 months ago
• xzhub / LTR_Finder
  LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.
  ☆43Updated last year
• lauguma / GWideCodeML
  A Python package for testing evolutionary hypotheses in genome-wide approaches.
  ☆31Updated 3 years ago
• mapleforest / HaploMerger2
  ☆43Updated 8 years ago
• johnssproul / RepeatProfiler
  ☆24Updated 2 weeks ago
• yongzhiyang2012 / WGDdetector
  ☆21Updated 5 years ago
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆52Updated last year
• slt666666 / NLRtracker
  NLR annotation tool
  ☆23Updated 10 months ago
• popgenome / lettuce2020
  Codes for the lettuce resequencing project in 2020
  ☆28Updated 3 years ago
• fanagislab / kmerfreq
  kmerfreq count K-mer (with size K) frequency from the input sequence data, typically sequencing reads data, and refe rence genome data is…
  ☆17Updated 4 years ago
• Gabaldonlab / perSVade
  perSVade: personalized Structural Variation detection
  ☆38Updated 2 months ago
• Yandell-Lab / maker
  Genome Annotation Pipeline
  ☆35Updated 5 months ago
• Nextomics / pipeline-for-isoseq
  A pipeline for isoseq
  ☆23Updated 6 years ago
• schneebergerlab / AMPRIL-genomes
  scripts for the project of seven thaliana genomes assembly
  ☆38Updated 3 years ago
• Ensembl / plant-scripts
  Scripting analyses of genomes in Ensembl Plants
  ☆38Updated this week
• phyloacc / PhyloAcc
  PhyloAcc a software to detect the changes of conservation of a genomic region
  ☆29Updated 3 months ago
• harta55 / EnTAP
  EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP
  ☆38Updated last week
• phasegenomics / juicebox_scripts
  A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats
  ☆65Updated 3 years ago
• Plant-Food-Research-Open / assemblyqc
  A Nextflow pipeline for evaluating assembly quality
  ☆28Updated last month
• dwinter / repeatR
  read and analyse RepeatMasker output
  ☆24Updated last year
• Sunhh / NGS_data_processing
  Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.
  ☆51Updated this week
• thackl / seq-scripts
  scripts for sequence and feature conversion, annotation, analysis ...
  ☆27Updated 9 months ago
• ellenbell / FasTE
  A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…
  ☆27Updated 2 years ago
• wjian8 / psvcp_v1.01
  Pan-genome Construction and Population Structure Variation Calling pipeline
  ☆36Updated 4 months ago
• HuffordLab / GenomeQC
  ☆32Updated 4 years ago
• dongwei1220 / EasySpeciesTree
  Easily construct the ML species tree with single-copy gene shared by different species.
  ☆25Updated 6 years ago
• annaprotasio / TE_ManAnnot
  Accompanying repository for our publications on manual curation methods for Transposable Elements.
  ☆20Updated 7 months ago