KatharinaHoff / GenomeAnnotation_WorkshopLinks
Materials for genome annotation sessions at the WORKSHOP ON GENOMICS, CESKY KRUMLOV
☆16Updated 6 months ago
Alternatives and similar repositories for GenomeAnnotation_Workshop
Users that are interested in GenomeAnnotation_Workshop are comparing it to the libraries listed below
Sorting:
- ☆22Updated 3 years ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆35Updated 2 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- A shiny application to visualize MCscan result☆37Updated 2 years ago
- ☆40Updated 2 years ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆36Updated 5 months ago
- Tutorials on phylogenomic analyses for the ForBio Phylogenomics course☆37Updated last year
- TSEBRA: Transcript Selector for BRAKER☆47Updated 8 months ago
- Accompanying repository for our publications on manual curation methods for Transposable Elements.☆20Updated last year
- Toolkit for evolutionary analyses of linkage groups☆32Updated last year
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆31Updated 6 months ago
- Genome Annotation Pipeline☆36Updated 10 months ago
- Wrapper for the genoPlotR R package. This wrapper makes phylogeny, genbank files and blast comparisons that is needed for the genoPLotR p…☆14Updated 3 years ago
- ☆28Updated last year
- ☆9Updated 4 years ago
- A genome assembly assessment pipeline.☆37Updated last year
- Multi-genome synteny block visualization tool☆42Updated 5 months ago
- Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data☆36Updated last year
- Quantifying Introgression via Branch Lengths☆53Updated 2 years ago
- SCORPiOs is a synteny-guided gene tree correction pipeline for clades that have undergone a whole-genome duplication event.☆21Updated 9 months ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- Testing WGD placement along a species tree using gene trees.☆9Updated 3 weeks ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆35Updated last year
- Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.☆14Updated last year
- A snakemake workflow for de novo genome assembly. It produces chromosome-scale primary/phased assemblies complete with organelles (mitoch…☆28Updated 2 months ago
- Identification of transposable element families from pangenome polymorphisms☆51Updated last month
- A tool to infer species tree and phylogenetic network from multilocus data☆32Updated 5 years ago
- BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins☆72Updated 9 months ago
- biodiversity genomics course by Nicol Rueda, Karin Näsvall and Joana Meier from the Wellcome Sanger Institute☆54Updated last month
- A tool for evaluate long-read de novo assembly results☆48Updated 10 months ago