Materials for genome annotation sessions at the WORKSHOP ON GENOMICS, CESKY KRUMLOV
☆21Jan 19, 2026Updated 2 months ago
Alternatives and similar repositories for GenomeAnnotation_Workshop
Users that are interested in GenomeAnnotation_Workshop are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Workshop on Genomics - Genomics Adventure☆47Jan 22, 2026Updated 2 months ago
- tutorial on pggb☆37Jan 13, 2025Updated last year
- This repo is designed as a step-by-step tutorial to teach RNA-seq analysis☆16Dec 21, 2025Updated 3 months ago
- Generation of OrthoDB protein sets for gene prediction experiments☆11Aug 8, 2024Updated last year
- ☆18Jun 30, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Software package for estimating fine-scale recombination rate.☆18Jun 8, 2021Updated 4 years ago
- Tutorials on phylogenomic analyses for the ForBio Phylogenomics course☆40Mar 4, 2024Updated 2 years ago
- genomic variant frequency estimation☆11Sep 7, 2025Updated 7 months ago
- A genome-wide IM blockwise likelihood estimation toolkit☆18Jun 24, 2024Updated last year
- ☆32Jun 15, 2023Updated 2 years ago
- R package to draw syntenic plots in 3 different styles☆46Feb 2, 2026Updated 2 months ago
- ZGA prokaryotic genome assembly and annotation pipeline☆13Sep 13, 2024Updated last year
- ☆16Apr 25, 2019Updated 6 years ago
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆148Jan 27, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts☆14Jul 5, 2023Updated 2 years ago
- Compute N50/NG50 and auN/auNG☆33Oct 7, 2023Updated 2 years ago
- R package for analysis of hybrids and hybrid zones☆21Dec 30, 2023Updated 2 years ago
- Better Alignments with Translated HMMER☆25Apr 8, 2026Updated last week
- ☆14Apr 6, 2026Updated last week
- General tools for genomic analyses.☆389Mar 25, 2026Updated 3 weeks ago
- parallelLastz: Running Lastz in parallel☆18Sep 13, 2024Updated last year
- Genome alignment and synteny plots☆34Mar 24, 2026Updated 3 weeks ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆27Nov 14, 2025Updated 5 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Recommended Graphtyper pipelines☆15Feb 22, 2021Updated 5 years ago
- Post-verkko graph and assembly curation in Python.☆18Apr 9, 2026Updated last week
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆121Feb 12, 2026Updated 2 months ago
- Domain based annotation of transposable elements☆23Oct 8, 2025Updated 6 months ago
- NGSEP is an integrated framework for analysis of short and long DNA high throughput sequencing reads. A complete list of functionalities …☆57Mar 11, 2026Updated last month
- R package to explore active transposable elements with RNA-seq data☆21Nov 25, 2022Updated 3 years ago
- Knowledge-based Identification of Pathway Enzymes (KIPEs) performs an automatic annotation of the flavonoid biosynthesis steps in a new t…☆17Feb 12, 2026Updated 2 months ago
- ☆11Nov 17, 2020Updated 5 years ago
- The gEAR Portal was created as a data archive and viewer for gene expression data including microarrays, bulk RNA-Seq, single-cell RNA-Se…☆21Apr 8, 2026Updated last week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- MitoDNA extending assembler from NGS data☆22Mar 19, 2026Updated 3 weeks ago
- Quantifying Introgression via Branch Lengths☆57Sep 30, 2022Updated 3 years ago
- The full-length Homology-based R-gene Prediction (HRP) pipeline to comprehensively identify full-length NB-LRR gene models within genome …☆11Jul 27, 2023Updated 2 years ago
- Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)☆19Nov 29, 2022Updated 3 years ago
- Workshop materials for SFSU SCIP 2022.☆16Jun 6, 2022Updated 3 years ago
- Chromosome-level synteny plotting using orthologous regions☆32Sep 19, 2024Updated last year
- Tandem repeat genotyping with long reads☆36Sep 23, 2025Updated 6 months ago