ConesaLab / SQANTI
☆12Updated 2 years ago
Alternatives and similar repositories for SQANTI:
Users that are interested in SQANTI are comparing it to the libraries listed below
- Long read to rMATS☆31Updated 2 years ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆14Updated last year
- ☆51Updated 5 years ago
- Error correction of ONT transcript reads☆58Updated last year
- Identify and annotate TE-mediated insertions in long-read sequence data☆41Updated last year
- MethPhaser: methylation-based haplotype phasing of human genomes☆48Updated 2 months ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Updated 7 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- ☆17Updated 2 weeks ago
- ☆22Updated 4 months ago
- ☆35Updated 2 years ago
- ☆39Updated 2 months ago
- ENCODE long read RNA-seq pipeline☆47Updated 2 years ago
- A gene fusion caller for long-read transcriptome sequencing data.☆18Updated last year
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- WDL workflows for variant calling and assembly using ONT☆33Updated this week
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆53Updated 6 months ago
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆26Updated this week
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆40Updated last week
- Reconstruction of focal amplifications with long reads☆20Updated this week
- Tool for demultiplexing Nanopore barcode sequence data☆21Updated 4 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆65Updated last month
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 4 months ago
- Immuological gene typing and annotation for genome assembly☆35Updated last month
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 3 years ago
- Variant annotation and merging pipeline☆33Updated last month
- LongcallR is a small variant caller for single molecule long-read RNA-seq data☆51Updated last week
- Transposable Element Finder - Detection of active transposable elements from NGS data☆9Updated last week
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆60Updated 6 months ago