ConesaLab / SQANTILinks
☆12Updated 2 years ago
Alternatives and similar repositories for SQANTI
Users that are interested in SQANTI are comparing it to the libraries listed below
Sorting:
- Long read to rMATS☆31Updated 2 years ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆14Updated last year
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆42Updated last week
- ☆51Updated 5 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- ☆41Updated 9 months ago
- ☆36Updated 2 years ago
- Immuological gene typing and annotation for genome assembly☆37Updated 3 months ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆40Updated 3 weeks ago
- ☆22Updated 6 months ago
- ☆19Updated 2 years ago
- Population-wide Deletion Calling☆35Updated 2 months ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆48Updated 3 months ago
- A gene fusion caller for long-read transcriptome sequencing data.☆19Updated last year
- ☆19Updated 10 months ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- ☆37Updated 5 years ago
- Personal diploid genome creation and coordinate conversion☆29Updated 2 months ago
- Structural variant caller☆54Updated 3 years ago
- Structural variant (SV) analysis tools☆36Updated 11 months ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆20Updated last year
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 3 years ago
- toolkit to process gtf files☆17Updated 3 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆32Updated last year
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆34Updated 6 years ago
- ☆19Updated 2 months ago
- Transposable Element Finder - Detection of active transposable elements from NGS data☆9Updated 3 weeks ago
- Automated Detection and Qualification of Differential Methylation☆14Updated last year
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 2 months ago