openvax / mhcflurryLinks
Peptide-MHC I binding affinity prediction
☆208Updated last month
Alternatives and similar repositories for mhcflurry
Users that are interested in mhcflurry are comparing it to the libraries listed below
Sorting:
- Github for files currently published in the IPD-IMGT/HLA FTP Directory hosted at the European Bioinformatics Institute☆227Updated 2 weeks ago
- Python interface to running command-line and web-based MHC binding predictors☆96Updated 8 months ago
- ☆74Updated last year
- 🗂️ [vdjdb.cdr3.net is up and running] Git-based TCR database storage & management. Submissions welcome!☆137Updated last week
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data☆119Updated 3 weeks ago
- Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them☆156Updated 10 months ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆177Updated last year
- predicting expression effects of human genome variants ab initio from sequence☆128Updated 4 months ago
- A python extension for quick access to bigWig and bigBed files☆232Updated 5 months ago
- [REPLACED by https://github.com/antigenomics/mirpy] Post-analysis of immune repertoire sequencing data☆138Updated last year
- BRAID is a department within Genentech dedicated to advancing biological and clinical sciences through artificial intelligence.☆200Updated 3 weeks ago
- deep residual neural network for classifying the pathogenicity of missense mutations.☆112Updated 3 years ago
- Deep networks for protein functional inference☆174Updated 2 weeks ago
- ☆62Updated 2 years ago
- python tools for TCR:peptide-MHC modeling and analysis☆79Updated last year
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆264Updated 2 weeks ago
- A generative latent variable model for biological sequence families.☆221Updated 3 years ago
- Grouping of Lymphocyte Interactions by Paratope Hotspots☆93Updated 4 years ago
- Multi-class signal peptide prediction and structure decoding model.☆87Updated 4 months ago
- MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.☆362Updated this week
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)☆84Updated 3 years ago
- Evolutionary couplings from protein and RNA sequence alignments☆271Updated 3 months ago
- Inference of couplings in proteins and RNAs from sequence variation☆109Updated 2 years ago
- WebLogo 3: Sequence Logos redrawn☆153Updated last month
- 📚 Tools and databases for analyzing HLA and VDJ genes.☆225Updated 2 months ago
- nucleic acid folding☆94Updated 10 months ago
- ☆157Updated this week
- Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotat…☆143Updated last week
- Detailed explanation on how to setup database for NCBI IgBlast executable, and using it in Python☆28Updated 3 years ago
- Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/☆283Updated last week