openvax / mhcflurryLinks
Peptide-MHC I binding affinity prediction
☆217Updated 5 months ago
Alternatives and similar repositories for mhcflurry
Users that are interested in mhcflurry are comparing it to the libraries listed below
Sorting:
- Python interface to running command-line and web-based MHC binding predictors☆98Updated last year
- Software for the visualization of sequence-function relationships☆204Updated 4 months ago
- WebLogo 3: Sequence Logos redrawn☆152Updated 5 months ago
- 🗂️ [vdjdb.cdr3.net is up and running] Git-based TCR database storage & management. Submissions welcome!☆145Updated 2 weeks ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆183Updated last year
- Github for files currently published in the IPD-IMGT/HLA FTP Directory hosted at the European Bioinformatics Institute☆242Updated 2 weeks ago
- ☆80Updated 2 years ago
- ☆68Updated 2 years ago
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆56Updated last year
- python tools for TCR:peptide-MHC modeling and analysis☆82Updated last year
- BRAID is a department within Genentech dedicated to advancing biological and clinical sciences through artificial intelligence.☆215Updated 2 months ago
- Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them☆167Updated 2 weeks ago
- Bioinformatics code for paper associated with deep diversification of AAV☆40Updated 11 months ago
- A list of tools on proteomics using deep learning☆106Updated last year
- Unified biological sequence manipulation in Python☆207Updated last year
- predicting expression effects of human genome variants ab initio from sequence☆132Updated 8 months ago
- HLA-II ligand predictor.☆45Updated 2 years ago
- Predicting dynamic cellular protein-RNA interactions using deep learning and in vivo RNA structure☆65Updated last year
- Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/☆286Updated 4 months ago
- A collection of available Python tools for Proteomics analysis☆61Updated 6 years ago
- Genomic Pre-trained Network☆298Updated this week
- Tool for deep mutational scanning experiments.☆54Updated 7 months ago
- This repository contains the code for our manuscript - 'The evolution, evolvability, and engineering gene regulatory DNA'☆96Updated 2 years ago
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆281Updated last week
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆34Updated 3 years ago
- Code for 5UTR project☆25Updated 2 years ago
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data☆120Updated last month
- A generative latent variable model for biological sequence families.☆241Updated 3 years ago
- Deep networks for protein functional inference☆177Updated 4 months ago
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆53Updated 6 years ago