FRED-2 / OptiType
Precision HLA typing from next-generation sequencing data
☆196Updated last year
Alternatives and similar repositories for OptiType:
Users that are interested in OptiType are comparing it to the libraries listed below
- VarDict☆194Updated last year
- A structural variation pipeline for short-read sequencing☆183Updated this week
- tools for adding mutations to existing .bam files, used for testing mutation callers☆239Updated 5 months ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆101Updated 4 months ago
- ENCODE Uniform processing pipeline for ChIP-seq☆123Updated 4 years ago
- An ensemble approach to accurately detect somatic mutations using SomaticSeq☆197Updated this week
- A short tutorial on how to use RSEM☆136Updated 4 years ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆210Updated last week
- AQUAS TF and histone ChIP-seq pipeline☆107Updated 2 years ago
- Annotates variants in MAF with OncoKB annotation.☆127Updated 5 months ago
- Finder of Somatic Fusion Genes in RNA-seq data☆145Updated last year
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆156Updated last year
- ☆112Updated last year
- ☆147Updated 2 years ago
- SUPPA: Fast quantification of splicing and differential splicing☆272Updated 9 months ago
- Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.☆177Updated last year
- ASCAT R package☆176Updated this week
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆212Updated 9 months ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆208Updated 3 weeks ago
- Gene fusion detection and visualization☆122Updated 3 years ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆212Updated 8 months ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆267Updated last year
- This Snakemake pipeline implements the GATK best-practices workflow☆250Updated last year
- Fast and accurate gene fusion detection from RNA-Seq data☆235Updated last week
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆239Updated 3 months ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆158Updated 7 months ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆264Updated last year
- STAR based ENCODE Long RNA-Seq processing pipeline☆94Updated 3 years ago
- Discovering known and novel miRNAs from small RNA sequencing data☆145Updated 6 months ago
- Copy number calling and variant classification using targeted short read sequencing☆132Updated this week