Precision HLA typing from next-generation sequencing data
☆223May 20, 2026Updated 3 months ago
Alternatives and similar repositories for OptiType
Users that are interested in OptiType are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- xHLA: Fast and accurate HLA typing from short read sequence data☆117Oct 13, 2023Updated 2 years ago
- Fast HLA type inference from whole-genome data☆147Apr 3, 2025Updated last year
- ⛏ HLA predictions from NGS shotgun data☆57Jun 4, 2026Updated 2 months ago
- Github for files currently published in the IPD-IMGT/HLA FTP Directory hosted at the European Bioinformatics Institute☆265Updated this week
- Fork of the Polysolver project☆33Nov 21, 2019Updated 6 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆187Updated this week
- DEPRECATED. This tool has been superseded by https://github.com/griffithlab/pVACtools☆60Apr 16, 2019Updated 7 years ago
- Probabilistic HLA typing☆35Aug 31, 2019Updated 6 years ago
- HLA typing for Sanger Based Test☆20Apr 7, 2023Updated 3 years ago
- Microassembly based somatic variant caller for NGS data☆154Jun 23, 2022Updated 4 years ago
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆162Aug 20, 2024Updated 2 years ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Aug 10, 2021Updated 5 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆52Sep 12, 2019Updated 6 years ago
- Characterization of Germline variants☆102Mar 15, 2022Updated 4 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Strelka2 germline and somatic small variant caller☆394Apr 20, 2026Updated 4 months ago
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆164Feb 12, 2026Updated 6 months ago
- ☆26Dec 4, 2019Updated 6 years ago
- SOAP-HLA is a flow of sequencing data analysis pipeline to type all of the HLA genes in IMGT/HLA database using capture sequenced data or…☆10Jun 3, 2020Updated 6 years ago
- Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.☆118Sep 2, 2024Updated last year
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆30Jul 17, 2026Updated last month
- Python for HLA analysis: summary, association analysis, zygosity test and interaction test☆37Apr 8, 2026Updated 4 months ago
- Precision HLA typing from next-generation sequencing data☆81Aug 20, 2026Updated last week
- ☆127Sep 5, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants☆568Updated this week
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆534Updated this week
- ☆19Feb 20, 2018Updated 8 years ago
- Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms☆419May 25, 2026Updated 3 months ago
- ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.☆84Jun 30, 2025Updated last year
- Copy number calling and variant classification using targeted short read sequencing☆150Feb 19, 2026Updated 6 months ago
- ASCAT R package☆204Feb 12, 2026Updated 6 months ago
- Peptide-MHC I binding affinity prediction☆273Updated this week
- R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping…☆14Jan 31, 2024Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.☆399Jul 10, 2026Updated last month
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆236Feb 17, 2022Updated 4 years ago
- microsatellite instability detection using tumor only or paired tumor-normal data☆134Jan 6, 2021Updated 5 years ago
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆117Apr 2, 2025Updated last year
- Probabilistic model for inferring clonal population structure from deep NGS sequencing.☆126Aug 19, 2020Updated 6 years ago
- Application for inferring subclonal composition and evolution from whole-genome sequencing data.☆114Oct 12, 2022Updated 3 years ago
- Microsatellite instability (MSI) detection for tumor only data.☆117Apr 23, 2024Updated 2 years ago