artyomovlab / hmmhc
MHC class II binding prediction
☆14Updated 2 years ago
Alternatives and similar repositories for hmmhc:
Users that are interested in hmmhc are comparing it to the libraries listed below
- 🏺 Exploring novel tumor epitope identification☆35Updated 4 years ago
- ☆47Updated 2 years ago
- Python package to annotate and visualize gene fusions.☆61Updated 5 months ago
- ☆19Updated 7 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 6 years ago
- Clinical interpretation of somatic mutations in cancer☆44Updated last week
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆62Updated 3 years ago
- ☆43Updated 6 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆26Updated last year
- An open-source and scalable solution to NGS analysis powered by the NIH's Biowulf cluster.☆4Updated last year
- 3D hotspot mutation proximity analysis tool☆46Updated last year
- ☆37Updated 5 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆43Updated 2 years ago
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆43Updated 2 years ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆24Updated 3 years ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆57Updated 2 months ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆69Updated 2 months ago
- A combined strategy to identify circular RNAs (circRNAs and ciRNAs) (Zhang et al., Complementary Sequence-Mediated Exon Circularization, …☆60Updated 5 years ago
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆36Updated 2 months ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆31Updated 3 years ago
- A continually expanding collection of RNA-seq tools☆48Updated 4 months ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆26Updated 6 months ago
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆33Updated 3 years ago
- RNA-seq Quantification of Alternative Polyadenylation☆46Updated last year
- direct comparison of circular and linear RNA expression☆21Updated 4 years ago
- Identifying recurrent mutations in cancer☆37Updated 4 years ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆77Updated 3 months ago
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆50Updated 2 years ago