☆20Mar 20, 2022Updated 4 years ago
Alternatives and similar repositories for PUFFIN
Users that are interested in PUFFIN are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MHCAttnNet: Allele-Peptide predictions for class I & class II MHC alleles☆30Feb 14, 2021Updated 5 years ago
- A sequence-based pan model for peptide-MHC I binding affinity prediction.☆26Apr 25, 2019Updated 6 years ago
- ☆15Jan 19, 2018Updated 8 years ago
- Peptide-MHC I binding affinity prediction☆239Updated this week
- ☆14Nov 3, 2021Updated 4 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Differential Mutation Analysis☆11May 24, 2020Updated 5 years ago
- Terraform template to create AWS resources to execute jobs using nextflow☆22Mar 1, 2023Updated 3 years ago
- ☆17Mar 22, 2022Updated 4 years ago
- Visualization of multiple tandem mass spectrometry data☆10Jun 15, 2020Updated 5 years ago
- R for Mass Spectrometry documentation☆14Nov 19, 2025Updated 4 months ago
- Code accompanying our blog post on a stronger docking baseline for Alpha Fold 3 docking☆23Jun 7, 2024Updated last year
- CWL implementation of CloudNeo: A cloud pipeline for identifying patient-specific tumor neoantigens☆19Apr 19, 2019Updated 6 years ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆20Aug 9, 2022Updated 3 years ago
- A simple BLOSUM module for python3☆18Nov 21, 2025Updated 4 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions☆11Jul 8, 2021Updated 4 years ago
- Code relating to http://dx.doi.org/10.2139/ssrn.4132721☆11Nov 24, 2022Updated 3 years ago
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆18Aug 18, 2022Updated 3 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Dec 26, 2023Updated 2 years ago
- Mutation rate analysis of autosomal loci☆15Jun 25, 2020Updated 5 years ago
- A Generative Model for Molecules in 3D Space☆12Nov 10, 2021Updated 4 years ago
- Effector and Perturbation Estimation Engine (EPEE) conducts differential analysis of transcription factor activity from gene expression d…☆16Oct 3, 2019Updated 6 years ago
- A modular JavaScript viewer for mass spectrometry data☆12May 20, 2022Updated 3 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Oct 31, 2019Updated 6 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- This repository attempts to implement a neural net that leverages the transformer architecture to predict peptide properties (retention t…☆11Nov 22, 2024Updated last year
- Phylogenetic Clustering (Phyloclustering)☆10Sep 6, 2023Updated 2 years ago
- ☆12Nov 21, 2023Updated 2 years ago
- Repository for RecallME-v.0.1 a variant calling pipelines benchmarker and optimizer☆13Dec 18, 2023Updated 2 years ago
- Supplementary data for the ACME algorithm☆23Oct 2, 2022Updated 3 years ago
- Reproducible GSEA Benchmarking☆14Updated this week
- For MHC-I protein-peptide binding predictions: Deep Learning model with CNN and Snakemake workflow☆13Oct 22, 2018Updated 7 years ago
- Repo for advertising and organizing CIViC unconference/meeting activities☆10Jul 24, 2025Updated 8 months ago
- Rep-Seq data analysis tutorial☆12Dec 6, 2017Updated 8 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆20Oct 29, 2025Updated 5 months ago
- ☆17Aug 11, 2025Updated 7 months ago
- MHC-peptide class II interaction prediction, binding, presentation☆22Mar 16, 2022Updated 4 years ago
- Github for files currently published in the IPD-IMGT/HLA FTP Directory hosted at the European Bioinformatics Institute☆252Mar 23, 2026Updated last week
- A sidekick to help you write code in notebooks☆15Jul 10, 2022Updated 3 years ago
- Spatiotemporal Clustering and Inference of Omics Networks (SC-ION)☆12Oct 24, 2024Updated last year
- Synthesis of molecules from fragments into larger molecules using graph-based representations and techniques.☆13Nov 25, 2015Updated 10 years ago