Alternatives and similar repositories for PUFFIN

Users that are interested in PUFFIN are comparing it to the libraries listed below

• altayg / Deep-Learning-MHCI
  For MHC-I protein-peptide binding predictions: Deep Learning model with CNN and Snakemake workflow
  ☆13Updated 6 years ago
• ctokheim / deepDegron
  Deep learning model to predict degron sequences
  ☆19Updated 2 years ago
• OATML / EVE
  Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…
  ☆67Updated 2 years ago
• GreiffLab / immuneSIM
  ☆38Updated last year
• bio2bel / kegg
  A Bio2BEL package for integrating pathway-related information from KEGG in BEL
  ☆13Updated 3 years ago
• dmnfarrell / epitopepredict
  Python package and command line tool for epitope prediction
  ☆52Updated last year
• masato-ogishi / Repitope
  Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.
  ☆24Updated last year
• TRON-Bioinformatics / neofox
  Annotation of mutated peptide sequences with published or novel potential neoantigen descriptors
  ☆33Updated 5 months ago
• SBRG / Protein_ML
  Machine learning workflows for analyzing high-throughput protein data
  ☆26Updated 8 years ago
• NCBI-Hackathons / Machine_Learning_Immunogenicity
  This is a repo for the Machine Learning Immunogenicity Team in the August 2016 NCBI Hackathon
  ☆23Updated 8 years ago
• uio-bmi / compairr
  Comparison of Adaptive Immune Receptor Repertoires
  ☆27Updated 7 months ago
• IdoSpringer / ERGO
  ERGO is a deep learing based model for predicting TCR-peptide binding.
  ☆18Updated 3 years ago
• nanxstats / protr
  🧬 Toolkit for generating various numerical features of protein sequences
  ☆53Updated this week
• matsengrp / vampire
  🧛 Deep generative models for TCR sequences 🧛
  ☆17Updated 3 years ago
• MannLabs / proteomesoflife
  python based queries for the proteomesoflife neo4j network database
  ☆14Updated 5 years ago
• IEDB / PEPMatch
  ☆21Updated this week
• CancerRxGene / gdsctools
  Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )
  ☆36Updated 3 years ago
• autosome-ru / LegNet
  accurate prediction of promoter activity and variant effects from massive parallel reporter assays
  ☆39Updated last month
• pachterlab / gget_examples
  Examples for gget (https://github.com/pachterlab/gget).
  ☆38Updated 3 months ago
• varnivey / ipanda
  insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…
  ☆25Updated 8 years ago
• johli / seqprop
  Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor
  ☆48Updated last year
• PavlopoulosLab / NORMA
  Network annotation visualization
  ☆18Updated 3 months ago
• pjsample / human_5utr_modeling
  Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.
  ☆50Updated 6 years ago
• momeara / BioChemPantry
  Load bioinformatics datasets into a local database
  ☆11Updated 4 months ago
• JanZrimec / DeepExpression
  ☆33Updated 2 years ago
• kuijjerlab / retriever
  Generate Robust Disease-Specific Response Signatures from the LINCS-L1000 Data
  ☆15Updated 3 years ago
• brandonsie / epitopefindr
  R package to BLAST peptide sequences against each other and identify the minimal overlap of aligning regions.
  ☆16Updated last year
• jiujiezz / deephlapan
  A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides…
  ☆44Updated 2 years ago
• evocellnet / funscoR
  R package for functionally scoring phosphorylation sites
  ☆21Updated 5 years ago
• Novartis / AEGIS
  MHC-II presentation predictor
  ☆12Updated 2 years ago