☆21Mar 20, 2022Updated 4 years ago
Alternatives and similar repositories for PUFFIN
Users that are interested in PUFFIN are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MHCAttnNet: Allele-Peptide predictions for class I & class II MHC alleles☆30Feb 14, 2021Updated 5 years ago
- A sequence-based pan model for peptide-MHC I binding affinity prediction.☆27Apr 25, 2019Updated 7 years ago
- Peptide-MHC I binding affinity prediction☆278Oct 2, 2026Updated last week
- ConvMHC - a web server for peptide-MHC class I binding predictions using deep convolutional neural networks☆18Sep 10, 2024Updated 2 years ago
- Terraform template to create AWS resources to execute jobs using nextflow☆22Mar 1, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Visualization of multiple tandem mass spectrometry data☆10Jun 15, 2020Updated 6 years ago
- Public repository for building and analyzing protein complex maps☆12Dec 6, 2016Updated 9 years ago
- AIDE: annotation-assisted isoform discovery and quantification from RNA-seq data☆16Aug 6, 2022Updated 4 years ago
- ☆15Mar 2, 2021Updated 5 years ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆22Jun 22, 2026Updated 3 months ago
- Code accompanying our blog post on a stronger docking baseline for Alpha Fold 3 docking☆23May 14, 2026Updated 4 months ago
- CWL implementation of CloudNeo: A cloud pipeline for identifying patient-specific tumor neoantigens☆19Apr 19, 2019Updated 7 years ago
- R for Mass Spectrometry documentation☆15Sep 24, 2026Updated 2 weeks ago
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆18Aug 18, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions☆12Jul 8, 2021Updated 5 years ago
- A simple BLOSUM module for python3☆18Nov 21, 2025Updated 10 months ago
- Code relating to http://dx.doi.org/10.2139/ssrn.4132721☆11Nov 24, 2022Updated 3 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Dec 26, 2023Updated 2 years ago
- Repo for advertising and organizing VICC, CGC, CIViC, & ClinGen Somatic: Variant Curation & Coding Unconference/meeting activities☆10Jun 2, 2026Updated 4 months ago
- A Generative Model for Molecules in 3D Space☆12Nov 10, 2021Updated 4 years ago
- Effector and Perturbation Estimation Engine (EPEE) conducts differential analysis of transcription factor activity from gene expression d…☆16Oct 3, 2019Updated 7 years ago
- A modular JavaScript viewer for mass spectrometry data☆12May 20, 2022Updated 4 years ago
- A sidekick to help you write code in notebooks☆15Jul 10, 2022Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Oct 31, 2019Updated 6 years ago
- Phylogenetic Clustering (Phyloclustering)☆10Sep 6, 2023Updated 3 years ago
- This repository attempts to implement a neural net that leverages the transformer architecture to predict peptide properties (retention t…☆10Nov 22, 2024Updated last year
- Spatiotemporal Clustering and Inference of Omics Networks (SC-ION)☆13Aug 24, 2026Updated last month
- ☆13Nov 21, 2023Updated 2 years ago
- Supplementary data for the ACME algorithm☆24Oct 2, 2022Updated 4 years ago
- RNA-Seq workflow for Kids-First DRC☆12May 12, 2026Updated 4 months ago
- For MHC-I protein-peptide binding predictions: Deep Learning model with CNN and Snakemake workflow☆13Oct 22, 2018Updated 7 years ago
- Reproducible GSEA Benchmarking☆14May 14, 2026Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆21Apr 28, 2026Updated 5 months ago
- ☆18Aug 11, 2025Updated last year
- MHC-peptide class II interaction prediction, binding, presentation☆22Mar 16, 2022Updated 4 years ago
- EventDrops d3.js timeline as R htmlwidget☆16Mar 14, 2017Updated 9 years ago
- R package implementing a simple method for CD8 T cell epitope prediction by MHC class I binding for HLA and other MHC-I molecules.☆15Sep 21, 2020Updated 6 years ago
- OnLine Spectral Search ENgine for Proteomics big data using Apache Spark, Python/Flask, and AngularJS☆15Sep 14, 2015Updated 11 years ago
- A web app for exploratory data analysis of high-throughput screens (HTS)☆17Sep 19, 2018Updated 8 years ago