umccr / neoantigensLinks
🏺 Exploring novel tumor epitope identification
☆34Updated 4 years ago
Alternatives and similar repositories for neoantigens
Users that are interested in neoantigens are comparing it to the libraries listed below
Sorting:
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆24Updated 3 years ago
- pTuneos: prioritizing Tumor neoantigen from next-generation sequencing data☆36Updated 3 years ago
- ☆48Updated 3 years ago
- ☆16Updated 3 years ago
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆28Updated 3 months ago
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆50Updated 6 years ago
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆21Updated 2 years ago
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆30Updated 2 years ago
- Predict mutated T-cell epitopes from sequencing data☆30Updated 4 months ago
- a Customized Proteogenomic Workflow for Neoantigen Prediction and Selection☆24Updated 3 years ago
- A continually expanding collection of RNA-seq tools☆51Updated 9 months ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆38Updated 6 years ago
- Epimap processing and analysis code repository☆33Updated 2 years ago
- Fast motif matching in R☆47Updated last year
- 3D hotspot mutation proximity analysis tool☆47Updated 2 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated last year
- Annotation of mutated peptide sequences with published or novel potential neoantigen descriptors☆32Updated 3 months ago
- Detect somatic variants from tumor and normal WGS/WXS data☆19Updated 2 months ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆27Updated 4 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 5 years ago
- Multi-omics disease sub-type specific drug repositioning aided with expression signatures from ConnectivityMap☆17Updated 5 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆51Updated 5 years ago
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆61Updated last week
- Bioinformatics pipeline for selecting patient-specific cancer neoantigen vaccines☆82Updated 5 months ago
- MHC Class I and Class II neoantigen binding prediction☆30Updated 2 years ago
- Dockstore implementation of CGP core WGS analysis☆30Updated 5 years ago
- Cell-Centric View of Tissue Transcriptome Measuring Cellular Compositions of Immune Microenvironment From Mouse RNA-Seq Data.☆25Updated 3 years ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆59Updated 7 months ago
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆36Updated 3 years ago
- Please consider using/contributing to https://github.com/nf-core/scdownstream☆25Updated last year