umccr / neoantigensLinks
πΊ Exploring novel tumor epitope identification
β36Updated 5 years ago
Alternatives and similar repositories for neoantigens
Users that are interested in neoantigens are comparing it to the libraries listed below
Sorting:
- QBRC Neoantigen calling pipeline with CSiN calculation embeddedβ24Updated 3 years ago
- A pipeline for identifying indel derived neoantigens using RNA-Seq dataβ30Updated 3 years ago
- β20Updated 3 years ago
- β49Updated 3 years ago
- A continually expanding collection of RNA-seq toolsβ52Updated this week
- βοΈ Matching T-cell repertoire against a database of TCR antigen specificitiesβ39Updated 6 years ago
- pTuneos: prioritizing Tumor neoantigen from next-generation sequencing dataβ36Updated 3 years ago
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity predictionβ21Updated 2 years ago
- IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screeningβ26Updated last year
- GREIN : GEO RNA-seq Experiments Interactive Navigatorβ50Updated 6 years ago
- Code related to the Celligner manuscriptβ46Updated 4 years ago
- Please consider using/contributing to https://github.com/nf-core/scdownstreamβ26Updated last year
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics dataβ¦β62Updated 3 months ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumoursβ27Updated 4 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profilesβ29Updated 5 years ago
- Epimap processing and analysis code repositoryβ33Updated 3 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq dataβ27Updated 2 years ago
- xOmicsShiny: an R Shiny application for cross-omics data analysis and pathway mapping, Bioinformatics Advances, Volume 5, Issue 1, 2025, β¦β33Updated 2 months ago
- Explore and download data from the recount3 projectβ36Updated 2 weeks ago
- Cell-Centric View of Tissue Transcriptome Measuring Cellular Compositions of Immune Microenvironment From Mouse RNA-Seq Data.β26Updated 3 years ago
- Fast motif matching in Rβ46Updated last year
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.β51Updated 6 years ago
- Splicing Neo Antigen Finder (SNAF) is an easy-to-use Python package to identify splicing-derived tumor neoantigens from RNA sequencing daβ¦β48Updated 7 months ago
- Explore the cancer relevance of your gene listβ52Updated 2 weeks ago
- model-based understanding of single-cell CRISPR screeningβ25Updated 9 months ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.β28Updated 4 years ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.β57Updated last year
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVALβ56Updated 2 years ago
- Immunology-related bioinformatics data and toolsβ75Updated last year
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://β¦β43Updated 5 years ago