umccr / neoantigensLinks
πΊ Exploring novel tumor epitope identification
β34Updated 4 years ago
Alternatives and similar repositories for neoantigens
Users that are interested in neoantigens are comparing it to the libraries listed below
Sorting:
- A pipeline for identifying indel derived neoantigens using RNA-Seq dataβ30Updated 2 years ago
- QBRC Neoantigen calling pipeline with CSiN calculation embeddedβ24Updated 3 years ago
- β48Updated 3 years ago
- A continually expanding collection of RNA-seq toolsβ51Updated 9 months ago
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity predictionβ21Updated 2 years ago
- β17Updated 3 years ago
- IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screeningβ25Updated 11 months ago
- GREIN : GEO RNA-seq Experiments Interactive Navigatorβ50Updated 6 years ago
- pTuneos: prioritizing Tumor neoantigen from next-generation sequencing dataβ36Updated 3 years ago
- Code related to the Celligner manuscriptβ46Updated 4 years ago
- Please consider using/contributing to https://github.com/nf-core/scdownstreamβ25Updated last year
- βοΈ Matching T-cell repertoire against a database of TCR antigen specificitiesβ38Updated 6 years ago
- Splicing Neo Antigen Finder (SNAF) is an easy-to-use Python package to identify splicing-derived tumor neoantigens from RNA sequencing daβ¦β47Updated 5 months ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profilesβ29Updated 5 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.β28Updated 4 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumoursβ27Updated 4 years ago
- Epimap processing and analysis code repositoryβ33Updated 2 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq dataβ27Updated last year
- Methods and analysis for Garcia-Nieto, et al. Somatic mutationsβ15Updated 5 years ago
- Regression-based annotation of protein-coding sequences from ribosome profiling dataβ32Updated 5 years ago
- GENIE3 (GEne Network Inference with Ensemble of trees) R-packageβ33Updated 3 years ago
- xOmicsShiny: an R Shiny application for cross-omics data analysis and pathway mapping, Bioinformatics Advances, Volume 5, Issue 1, 2025, β¦β31Updated last week
- Inference of TCR motifsβ32Updated last month
- Fast motif matching in Rβ46Updated last year
- Explore the cancer relevance of your gene listβ51Updated 5 months ago
- Cell-Centric View of Tissue Transcriptome Measuring Cellular Compositions of Immune Microenvironment From Mouse RNA-Seq Data.β26Updated 3 years ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.β56Updated last year
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics dataβ¦β62Updated last month
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.β51Updated 5 years ago
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networksβ28Updated 3 months ago