umccr / neoantigens
🏺 Exploring novel tumor epitope identification
☆35Updated 4 years ago
Alternatives and similar repositories for neoantigens:
Users that are interested in neoantigens are comparing it to the libraries listed below
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆30Updated 2 years ago
- ☆47Updated 2 years ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆24Updated 3 years ago
- A continually expanding collection of RNA-seq tools☆48Updated 5 months ago
- a Customized Proteogenomic Workflow for Neoantigen Prediction and Selection☆24Updated 2 years ago
- IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening☆24Updated 7 months ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆57Updated 3 months ago
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆49Updated 5 years ago
- A novel PSSM based software for predicting class I peptide-HLA binding affinity☆17Updated 8 years ago
- Epimap processing and analysis code repository☆33Updated 2 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆50Updated 5 years ago
- Predict mutated T-cell epitopes from sequencing data☆30Updated last month
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 5 years ago
- ☆40Updated 6 years ago
- ☆10Updated 4 years ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆38Updated 6 years ago
- Cell-Centric View of Tissue Transcriptome Measuring Cellular Compositions of Immune Microenvironment From Mouse RNA-Seq Data.☆24Updated 3 years ago
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆28Updated last month
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated last year
- BAGEL software☆27Updated last year
- Processing of single cell RNAseq data for the recovery of TCRs in python☆27Updated 4 years ago
- ☆47Updated 2 months ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆56Updated last year
- Please consider using/contributing to https://github.com/nf-core/scdownstream☆24Updated 9 months ago
- ☆14Updated 2 years ago
- ☆43Updated 6 years ago
- processes GoT amplicon data and generates a table of metrics☆29Updated 2 years ago
- Cellsnake tool main repo☆34Updated last year
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆26Updated 4 years ago
- Explore the cancer relevance of your gene list☆51Updated last month