IdoSpringer / ERGOLinks
ERGO is a deep learing based model for predicting TCR-peptide binding.
β17Updated 2 years ago
Alternatives and similar repositories for ERGO
Users that are interested in ERGO are comparing it to the libraries listed below
Sorting:
- π§ Deep generative models for TCR sequences π§β17Updated 3 years ago
- Python package and command line tool for epitope predictionβ51Updated 10 months ago
- Amino acid embedding and Convolutional Neural Network for HLA Class I-peptide binding predictionβ25Updated 7 years ago
- Repository for code for mapping sequence data to structural datasets.β8Updated 6 years ago
- β26Updated last year
- β17Updated 3 years ago
- HLA-I ligand predictorβ40Updated 6 months ago
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done byβ¦β19Updated 2 years ago
- HLA-II ligand predictor.β43Updated 2 years ago
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictorβ48Updated 10 months ago
- predicting peptide and TCR interactionβ20Updated 4 years ago
- Detects hotspot regions for somatic mutations in 3D protein structuresβ3Updated last year
- GraphProt: modelling binding preferences of RNA-binding proteinsβ21Updated 6 years ago
- End-to-end deep learning toolkit for predicting protein binding sites and motifs.β45Updated 6 years ago
- MHC Class I and Class II neoantigen binding predictionβ30Updated 2 years ago
- Cross-protein transfer learning for variant effect predictionβ20Updated last year
- a framework for predicting global protein-protein interaction networks from dynamic mass spec dataβ24Updated last year
- An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologiesβ32Updated 2 months ago
- Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019β17Updated 5 years ago
- Interpretation by Deep Generative Masking for Biological Sequencesβ37Updated 3 years ago
- Analysis of antibody NGS dataβ12Updated 3 years ago
- Methods for mapping genomic data onto 3D protein structure.β28Updated 3 years ago
- β38Updated last year
- A platform to do RNA scienceβ27Updated 4 years ago
- A Python tool for prediction MHC ligandβ34Updated 6 years ago
- Absolve antibody variable domain sequence analysisβ16Updated 6 years ago
- STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint Tβ¦β26Updated 2 months ago
- insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysisβ¦β25Updated 8 years ago
- Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.β24Updated last year
- Modeling of human 5β² UTRs enables the design of new sequences for target levels of translation and 5β² UTR variant prediction.β48Updated 5 years ago