Alternatives and similar repositories for ERGO:

Users that are interested in ERGO are comparing it to the libraries listed below

• matsengrp / vampire
  🧛 Deep generative models for TCR sequences 🧛
  ☆17Updated 2 years ago
• GfellerLab / MixMHCpred
  HLA-I ligand predictor
  ☆32Updated last month
• dmnfarrell / epitopepredict
  Python package and command line tool for epitope prediction
  ☆51Updated 6 months ago
• GreiffLab / immuneSIM
  ☆37Updated last year
• uci-cbcl / HLA-bind
  Amino acid embedding and Convolutional Neural Network for HLA Class I-peptide binding prediction
  ☆25Updated 7 years ago
• mnielLab / netTCR
  predicting peptide and TCR interaction
  ☆20Updated 4 years ago
• castillohair / paper-5utr-design
  Code for "Optimizing 5’UTRs for mRNA-delivered gene editing using deep learning"
  ☆17Updated 7 months ago
• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆39Updated last year
• KarchinLab / HotMAPS_2016
  Detects hotspot regions for somatic mutations in 3D protein structures
  ☆2Updated 11 months ago
• gifford-lab / DeepLigand
  ☆17Updated 2 years ago
• masato-ogishi / Repitope
  Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.
  ☆24Updated last year
• smolkelab / promoter_design
  Promoter activity measurement and modeling; artificial promoter design and testing
  ☆12Updated last year
• ctokheim / deepDegron
  Deep learning model to predict degron sequences
  ☆19Updated last year
• varnivey / ipanda
  insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…
  ☆25Updated 7 years ago
• pjsample / human_5utr_modeling
  Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.
  ☆44Updated 5 years ago
• NKI-AI / STAPLER
  STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…
  ☆25Updated 9 months ago
• jiujiezz / deephlapan
  A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides…
  ☆41Updated last year
• konradkrawczyk / StructuralMapping
  Repository for code for mapping sequence data to structural datasets.
  ☆8Updated 6 years ago
• pmoris / ImRex
  Generic TCR-epitope recognition prediction using CNN approach on both known and novel epitopes
  ☆15Updated last year
• KarchinLab / mhcnuggets
  MHC Class I and Class II neoantigen binding prediction
  ☆28Updated last year
• cmb-chula / MHCSeqNet
  A Python tool for prediction MHC ligand
  ☆33Updated 6 years ago
• sbl-sdsc / mmtf-genomics
  Methods for mapping genomic data onto 3D protein structure.
  ☆28Updated 2 years ago
• johli / scrambler
  Interpretation by Deep Generative Masking for Biological Sequences
  ☆37Updated 3 years ago
• kundajelab / coessentiality
  Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)
  ☆27Updated 2 years ago
• chembl / tractability_pipeline_v2
  Pipeline for assessing the tractability of potential targets (starting from Gene IDs)
  ☆20Updated last week
• songlab-cal / CPT
  Cross-protein transfer learning for variant effect prediction
  ☆19Updated last year
• FunctionLab / tapioca
  a framework for predicting global protein-protein interaction networks from dynamic mass spec data
  ☆23Updated 10 months ago
• Genentech / Absolve
  Absolve antibody variable domain sequence analysis
  ☆16Updated 6 years ago
• brineylab / abstar
  VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.
  ☆42Updated this week
• johli / seqprop
  Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor
  ☆44Updated 6 months ago