ERGO is a deep learing based model for predicting TCR-peptide binding.
☆18Aug 18, 2022Updated 3 years ago
Alternatives and similar repositories for ERGO
Users that are interested in ERGO are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Amino acid embedding and Convolutional Neural Network for HLA Class I-peptide binding prediction☆26Aug 3, 2017Updated 9 years ago
- ☆17Mar 22, 2022Updated 4 years ago
- ☆49Jul 7, 2022Updated 4 years ago
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆36Apr 1, 2022Updated 4 years ago
- predicting peptide and TCR interaction☆19Jan 27, 2021Updated 5 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Published at Bioinformatics☆12Jul 4, 2024Updated 2 years ago
- ☆17Dec 13, 2020Updated 5 years ago
- Personalized cancer epitope discovery and peptide vaccine prediction pipeline☆30Nov 14, 2017Updated 8 years ago
- A sequence-based pan model for peptide-MHC II binding affinity prediction.☆21May 16, 2022Updated 4 years ago
- Simple matching of HTS samples based on HLA typing☆14Jan 4, 2017Updated 9 years ago
- ConvMHC - a web server for peptide-MHC class I binding predictions using deep convolutional neural networks☆18Sep 10, 2024Updated last year
- A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides…☆44Mar 25, 2023Updated 3 years ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆22Jun 22, 2026Updated last month
- Sequence-based protein solubility prediction using multidimensional embedding☆13Apr 19, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.☆64Feb 2, 2026Updated 6 months ago
- 🎨 R package: Unified Handling of Graphics Devices☆19May 9, 2026Updated 3 months ago
- ☆21Mar 20, 2022Updated 4 years ago
- DEPRECATED. This tool has been superseded by https://github.com/griffithlab/pVACtools☆60Apr 16, 2019Updated 7 years ago
- MHC-peptide class II interaction prediction, binding, presentation☆22Mar 16, 2022Updated 4 years ago
- Sequence-based protein solubility predictor☆11Apr 1, 2020Updated 6 years ago
- The inverse materials design is a key topic of materials science nowadays. The proposed software solutions are useful tools for decision …☆11Jul 15, 2020Updated 6 years ago
- Open-source opinionated Galaxy-based framework for microbiota analysis☆13Jan 21, 2021Updated 5 years ago
- Team Heidelberg's new and sharksome software.☆13Sep 19, 2015Updated 10 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence☆26May 16, 2026Updated 2 months ago
- Repo for advertising and organizing VICC, CGC, CIViC, & ClinGen Somatic: Variant Curation & Coding Unconference/meeting activities☆10Jun 2, 2026Updated 2 months ago
- Scripts for bioinformatics data processing and analysis☆12Nov 7, 2023Updated 2 years ago
- hexo theme☆11Apr 8, 2022Updated 4 years ago
- Differential Mutation Analysis☆11May 24, 2020Updated 6 years ago
- ☆14Dec 18, 2019Updated 6 years ago
- Redis Celery Fabric Gunicorn Personal Blog☆13Aug 8, 2017Updated 9 years ago
- Multi-Channel Deep Chemogenomic Modeling of Receptor-Ligand Binding Affinity Prediction for Drug Discovery☆28May 16, 2021Updated 5 years ago
- Inorganic Reaction Prediction☆11Jul 25, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Transactions, Keys, and Values☆22Nov 3, 2017Updated 8 years ago
- a tutorial about gitbook☆11Oct 2, 2018Updated 7 years ago
- Peptide Virtual Screening Pipeline☆14Jul 3, 2019Updated 7 years ago
- Rep-Seq data analysis tutorial☆12Dec 6, 2017Updated 8 years ago
- An open-source automated peptide synthesizer based on Arduino and Python☆13Dec 19, 2025Updated 7 months ago
- Generate 3D transition state geometries with GNNs☆13Oct 13, 2020Updated 5 years ago
- parseR: Pipeline for rna-seq analysis in R☆17Jun 23, 2017Updated 9 years ago