Alternatives and similar repositories for PEPMatch

Users that are interested in PEPMatch are comparing it to the libraries listed below

• GreiffLab / immuneSIM
  ☆38Updated last year
• ctokheim / deepDegron
  Deep learning model to predict degron sequences
  ☆19Updated 2 years ago
• GfellerLab / PRIME
  PRedictor of IMmunogenic Epitopes
  ☆24Updated 3 months ago
• evocellnet / funscoR
  R package for functionally scoring phosphorylation sites
  ☆21Updated 5 years ago
• masato-ogishi / Repitope
  Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.
  ☆24Updated last year
• uio-bmi / compairr
  Comparison of Adaptive Immune Receptor Repertoires
  ☆27Updated 7 months ago
• crowelab / PyIR
  Immunoglobulin and T-Cell receptor rearrangement software
  ☆49Updated last year
• MaayanLab / maayanlab-bioinformatics
  A collection of useful functions for bioinformatics data analysis
  ☆24Updated last month
• multimeric / Unipressed
  Comprehensive Python client for the Uniprot REST API
  ☆51Updated 2 months ago
• GfellerLab / MixMHCpred
  HLA-I ligand predictor
  ☆42Updated 8 months ago
• bigbio / ibaqpy
  Absolute quantification package based on quantms.io
  ☆15Updated 3 months ago
• nf-core / metaboigniter
  Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.
  ☆23Updated 2 months ago
• ArcInstitute / ScreenPro2
  Flexible analysis of high-content CRISPR screening
  ☆31Updated last week
• brineylab / abstar
  VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.
  ☆42Updated 3 weeks ago
• uio-bmi / immuneML
  immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.
  ☆68Updated this week
• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆44Updated 2 years ago
• nf-core / epitopeprediction
  A bioinformatics best-practice analysis pipeline for epitope prediction and annotation
  ☆48Updated last month
• chenhcs / FRoGS
  Functional Embedding of Gene Signatures
  ☆46Updated last year
• IxI-97 / BiomiX
  R tool to analyse and integrate multiple -omics data
  ☆13Updated 2 months ago
• Genentech / Absolve
  Absolve antibody variable domain sequence analysis
  ☆18Updated 6 years ago
• kundajelab / coessentiality
  Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)
  ☆27Updated 3 years ago
• uclahs-cds / package-moPepGen
  Multi-Omics Peptide Generator
  ☆23Updated this week
• KarchinLab / mhcnuggets
  MHC Class I and Class II neoantigen binding prediction
  ☆30Updated last month
• kenichi-shimada / shinyDepMap
  A shiny-based web tool for interactive analysis of DepMap data
  ☆23Updated 4 years ago
• psathyrella / partis
  B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction
  ☆59Updated this week
• hart-lab / drugz
  DRUGZ software
  ☆23Updated 4 years ago
• dmnfarrell / epitopepredict
  Python package and command line tool for epitope prediction
  ☆52Updated last year
• MannLabs / proteomesoflife
  python based queries for the proteomesoflife neo4j network database
  ☆14Updated 5 years ago
• kuijjerlab / retriever
  Generate Robust Disease-Specific Response Signatures from the LINCS-L1000 Data
  ☆15Updated 3 years ago
• pachterlab / gget_examples
  Examples for gget (https://github.com/pachterlab/gget).
  ☆38Updated 3 months ago