Alternatives and similar repositories for PEPMatch

Users that are interested in PEPMatch are comparing it to the libraries listed below

• GfellerLab / PRIME
  PRedictor of IMmunogenic Epitopes
  ☆24Updated last month
• uio-bmi / compairr
  Comparison of Adaptive Immune Receptor Repertoires
  ☆28Updated 9 months ago
• Genentech / Absolve
  Absolve antibody variable domain sequence analysis
  ☆18Updated 7 years ago
• multimeric / Unipressed
  Comprehensive Python client for the Uniprot REST API
  ☆52Updated 3 weeks ago
• ArcInstitute / ScreenPro2
  Flexible analysis of high-content CRISPR screening
  ☆30Updated 2 months ago
• GreiffLab / immuneSIM
  ☆38Updated last year
• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆45Updated 2 years ago
• MaayanLab / maayanlab-bioinformatics
  A collection of useful functions for bioinformatics data analysis
  ☆25Updated 3 months ago
• bigbio / ibaqpy
  Absolute quantification package based on quantms.io
  ☆16Updated last month
• MannLabs / proteomesoflife
  python based queries for the proteomesoflife neo4j network database
  ☆14Updated 5 years ago
• kentsislab / UltraQuant
  MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters
  ☆27Updated 7 years ago
• psathyrella / partis
  B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction
  ☆60Updated last week
• nf-core / epitopeprediction
  A bioinformatics best-practice analysis pipeline for epitope prediction and annotation
  ☆47Updated last week
• nf-core / mhcquant
  Identify and quantify MHC eluted peptides from mass spectrometry raw data
  ☆39Updated this week
• IxI-97 / BiomiX
  R tool to analyse and integrate multiple -omics data
  ☆14Updated 4 months ago
• uio-bmi / immuneML
  immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.
  ☆69Updated last week
• hart-lab / drugz
  DRUGZ software
  ☆24Updated 4 years ago
• emmijokinen / TCRconv
  TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…
  ☆25Updated 3 years ago
• crowelab / PyIR
  Immunoglobulin and T-Cell receptor rearrangement software
  ☆50Updated last year
• VariantEffect / mavetools
  Useful functions for manipulating Multiplex Assay of Variant Effect datasets.
  ☆10Updated 8 months ago
• santiago1234 / iCodon
  iCodon customizes gene expression based on the codon composition
  ☆15Updated 2 years ago
• ctokheim / deepDegron
  Deep learning model to predict degron sequences
  ☆19Updated 2 years ago
• MaayanLab / archs4py
  Python package to load and query ARCHS4 data
  ☆23Updated 3 months ago
• chenhcs / FRoGS
  Functional Embedding of Gene Signatures
  ☆46Updated last year
• crazyhottommy / Machine_learning_drug_discovery
  ☆27Updated 6 months ago
• kundajelab / coessentiality
  Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)
  ☆27Updated 3 years ago
• MannLabs / OmicLearn
  🧪 🖥 Transparent exploration of machine learning for biomarker discovery from proteomics and omics data
  ☆37Updated last year
• evocellnet / funscoR
  R package for functionally scoring phosphorylation sites
  ☆21Updated 5 years ago
• getzlab / CLUMPS-PTM
  CLUMPS adapted to post-translational modifications.
  ☆10Updated 5 months ago
• GfellerLab / MixMHCpred
  HLA-I ligand predictor
  ☆43Updated last month