Alternatives and similar repositories for PEPMatch:

Users that are interested in PEPMatch are comparing it to the libraries listed below

• GfellerLab / PRIME
  PRedictor of IMmunogenic Epitopes
  ☆17Updated 8 months ago
• uio-bmi / compairr
  Comparison of Adaptive Immune Receptor Repertoires
  ☆26Updated last year
• Genentech / Absolve
  Absolve antibody variable domain sequence analysis
  ☆16Updated 6 years ago
• nf-core / mhcquant
  Identify and quantify MHC eluted peptides from mass spectrometry raw data
  ☆33Updated this week
• kentsisresearchgroup / UltraQuant
  MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters
  ☆26Updated 6 years ago
• multimeric / Unipressed
  Comprehensive Python client for the Uniprot REST API
  ☆44Updated 5 months ago
• ctokheim / deepDegron
  Deep learning model to predict degron sequences
  ☆19Updated last year
• GreiffLab / immuneSIM
  ☆38Updated last year
• dmnfarrell / epitopepredict
  Python package and command line tool for epitope prediction
  ☆49Updated 5 months ago
• CapraLab / cosmis
  COSMIS is a framework for quantifying the mutational constraint on amino acid sites in 3D spatial neighborhoods. The framework currently …
  ☆17Updated 2 years ago
• masato-ogishi / Repitope
  Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.
  ☆23Updated last year
• hawkjo / freebarcodes
  FREE Divergence Error-Correcting DNA Barcodes
  ☆26Updated 5 months ago
• bigbio / ibaqpy
  Absolute quantification package based on quantms.io
  ☆11Updated this week
• evocellnet / funscoR
  R package for functionally scoring phosphorylation sites
  ☆19Updated 5 years ago
• santiago1234 / iCodon
  iCodon customizes gene expression based on the codon composition
  ☆14Updated last year
• biosustain / snakemake_UmetaFlow
  Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake
  ☆25Updated 2 weeks ago
• dincarnato / RNAFramework
  RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
  ☆36Updated 2 weeks ago
• KarchinLab / HotMAPS_2016
  Detects hotspot regions for somatic mutations in 3D protein structures
  ☆2Updated 10 months ago
• nf-core / epitopeprediction
  A bioinformatics best-practice analysis pipeline for epitope prediction and annotation
  ☆43Updated last month
• ThomasCMcLean / LazyAF
  Code for LazyAF pipeline
  ☆21Updated 11 months ago
• ViennaRNA / RNAsketch
  Python wrapper to design RNA molecules using RNAblueprint, RNARedPrint and for energy evaluations ViennaRNA, Hotknots, pKiss and Nupack.
  ☆20Updated 6 years ago
• MannLabs / proteomesoflife
  python based queries for the proteomesoflife neo4j network database
  ☆13Updated 4 years ago
• EBIvariation / CMAT
  ClinVar Mapping and Annotation Toolkit
  ☆19Updated last month
• athchen / beer
  Bayesian enrichment estimation in R
  ☆10Updated 2 years ago
• KarchinLab / mhcnuggets
  MHC Class I and Class II neoantigen binding prediction
  ☆26Updated last year
• yafeng / DEqMS
  DEqMS is a tool for quantitative proteomic analysis
  ☆22Updated last month
• matsengrp / phippery
  ☆14Updated 2 months ago
• kohanlee1995 / MHCfovea
  ☆14Updated 3 years ago
• nf-core / diaproteomics
  Automated quantitative analysis of DIA proteomics mass spectrometry measurements.
  ☆16Updated last week
• bio2bel / kegg
  A Bio2BEL package for integrating pathway-related information from KEGG in BEL
  ☆13Updated 2 years ago