griffithlab / pVACtoolsLinks
☆161Updated this week
Alternatives and similar repositories for pVACtools
Users that are interested in pVACtools are comparing it to the libraries listed below
Sorting:
- Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.☆112Updated last year
- Precision HLA typing from next-generation sequencing data☆205Updated last year
- Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders☆155Updated this week
- Finder of Somatic Fusion Genes in RNA-seq data☆147Updated last month
- Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.☆190Updated last year
- Plugins for the Ensembl Variant Effect Predictor (VEP)☆158Updated last month
- An ensemble approach to accurately detect somatic mutations using SomaticSeq☆199Updated 2 months ago
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆143Updated last year
- A structural variation pipeline for short-read sequencing☆193Updated this week
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆106Updated 4 months ago
- Gene fusion detection and visualization☆128Updated 3 years ago
- Annotates variants in MAF with OncoKB annotation.☆135Updated 3 months ago
- Microsatellite instability (MSI) detection for tumor only data.☆110Updated last year
- ☆155Updated 2 years ago
- xHLA: Fast and accurate HLA typing from short read sequence data☆113Updated 2 years ago
- AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and …☆155Updated last year
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆172Updated last year
- Discovering known and novel miRNAs from small RNA sequencing data☆154Updated last year
- A (mostly) universal methylation extractor for BS-seq experiments.☆172Updated last year
- [Deprecated, see https://github.com/antigenomics/mirpy and other tools @antigenomics] Post-analysis of immune repertoire sequencing data☆140Updated last year
- Fast, efficient RNA-Seq metrics for quality control and process optimization☆175Updated 11 months ago
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆113Updated 6 months ago
- Analysis pipeline for the GUIDE-seq assay.☆80Updated 2 years ago
- microsatellite instability detection using tumor only or paired tumor-normal data☆132Updated 4 years ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆86Updated 5 months ago
- SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the n…☆164Updated 3 weeks ago
- A short tutorial on how to use RSEM☆138Updated 5 years ago
- Fast HLA type inference from whole-genome data☆138Updated 6 months ago
- ☆116Updated 2 years ago
- TransVar - multiway annotator for precision medicine☆126Updated 2 years ago