cmb-chula / MHCSeqNet
A Python tool for prediction MHC ligand
☆33Updated 5 years ago
Alternatives and similar repositories for MHCSeqNet:
Users that are interested in MHCSeqNet are comparing it to the libraries listed below
- HLA-I ligand predictor☆31Updated last month
- HLA-II ligand predictor.☆38Updated last year
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆17Updated 2 years ago
- MHC Class I and Class II neoantigen binding prediction☆26Updated last year
- 🧛 Deep generative models for TCR sequences 🧛☆17Updated 2 years ago
- predicting peptide and TCR interaction☆20Updated 4 years ago
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆43Updated 5 years ago
- ☆37Updated last year
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆44Updated 5 months ago
- Code for "Optimizing 5’UTRs for mRNA-delivered gene editing using deep learning"☆16Updated 6 months ago
- Predicting gene expression levels from genomic sequences☆51Updated 4 years ago
- A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides…☆41Updated last year
- Knowledge-primed neural networks☆35Updated last year
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆64Updated this week
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆33Updated 3 months ago
- Python package and command line tool for epitope prediction☆51Updated 5 months ago
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆36Updated 3 weeks ago
- ☆70Updated last year
- Amino acid embedding and Convolutional Neural Network for HLA Class I-peptide binding prediction☆25Updated 7 years ago
- ☆14Updated 3 years ago
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆29Updated 2 years ago
- Python interface to running command-line and web-based MHC binding predictors☆94Updated 3 months ago
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆81Updated 4 months ago
- Code and data used in The Great Repertoire Project☆29Updated 3 years ago
- Code for "T Cell Receptor Specificity Prediction with Bimodal Attention Networks" (https://doi.org/10.1093/bioinformatics/btab294, ISMB 2…☆29Updated last year
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆18Updated 4 years ago
- Tool for deep mutational scanning experiments.☆48Updated last week
- Absolve antibody variable domain sequence analysis☆16Updated 6 years ago
- Generic TCR-epitope recognition prediction using CNN approach on both known and novel epitopes☆15Updated last year
- ☆47Updated 2 years ago