A Python tool for prediction MHC ligand
☆35Feb 10, 2019Updated 7 years ago
Alternatives and similar repositories for MHCSeqNet
Users that are interested in MHCSeqNet are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Peptide-MHC I binding affinity prediction☆246Updated this week
- HLA-II ligand predictor.☆45Apr 6, 2023Updated 3 years ago
- R package implementing a simple method for CD8 T cell epitope prediction by MHC class I binding for HLA and other MHC-I molecules.☆15Sep 21, 2020Updated 5 years ago
- HLA-I ligand predictor☆45Mar 19, 2026Updated last month
- Tool for Motif Deconvolution in large HLA-II ligand datasets without the need of prior alignment.☆15Feb 17, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A sequence-based pan model for peptide-MHC I binding affinity prediction.☆26Apr 25, 2019Updated 7 years ago
- MHCAttnNet: Allele-Peptide predictions for class I & class II MHC alleles☆30Feb 14, 2021Updated 5 years ago
- ☆11Aug 5, 2020Updated 5 years ago
- For MHC-I protein-peptide binding predictions: Deep Learning model with CNN and Snakemake workflow☆13Oct 22, 2018Updated 7 years ago
- Python interface to running command-line and web-based MHC binding predictors☆101Apr 18, 2026Updated 2 weeks ago
- ☆17Apr 9, 2026Updated 3 weeks ago
- Amino acid embedding and Convolutional Neural Network for HLA Class I-peptide binding prediction☆26Aug 3, 2017Updated 8 years ago
- MHC Class I and Class II neoantigen binding prediction☆37Jul 23, 2025Updated 9 months ago
- Singularity port of HLA typing based on an input exome BAM file and is currently infers infers alleles for the three major MHC class I (…☆14Jan 15, 2017Updated 9 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆10Apr 1, 2022Updated 4 years ago
- Supplementary data for the ACME algorithm☆23Oct 2, 2022Updated 3 years ago
- Published at Bioinformatics☆12Jul 4, 2024Updated last year
- predicting peptide and TCR interaction☆20Jan 27, 2021Updated 5 years ago
- Python package and command line tool for epitope prediction☆53Aug 2, 2024Updated last year
- Upload test☆23Jan 1, 2024Updated 2 years ago
- ☆14Mar 2, 2021Updated 5 years ago
- ☆20Mar 20, 2022Updated 4 years ago
- A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides…☆44Mar 25, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- SOAP-HLA is a flow of sequencing data analysis pipeline to type all of the HLA genes in IMGT/HLA database using capture sequenced data or…☆10Jun 3, 2020Updated 5 years ago
- R package – HLA Genotype Imputation with Attribute Bagging (development version only)☆31Updated this week
- ☆28Dec 17, 2019Updated 6 years ago
- ☆12Nov 28, 2023Updated 2 years ago
- Immunogenetic Data Tools related to HLA, GLStrings, Linkage Disequilibrium☆11Jun 14, 2023Updated 2 years ago
- Bioinformatics pipeline for selecting patient-specific cancer neoantigen vaccines☆92Sep 15, 2025Updated 7 months ago
- Probabilistic HLA typing☆35Aug 31, 2019Updated 6 years ago
- R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping…☆14Jan 31, 2024Updated 2 years ago
- A sequence-based pan model for peptide-MHC II binding affinity prediction.☆21May 16, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A cross-platform C++11 implementation of the CMM language interpreter☆11Jul 18, 2025Updated 9 months ago
- convert a blast output to a bed file☆12Jun 19, 2015Updated 10 years ago
- MHC-II presentation predictor☆13Aug 11, 2023Updated 2 years ago
- Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing☆17Jan 19, 2018Updated 8 years ago
- plotnineSeqSuite: a Python package for visualizing sequence data using ggplot2 style☆17Dec 19, 2025Updated 4 months ago
- Precision HLA typing from next-generation sequencing data☆215Mar 3, 2026Updated last month
- A Python implementation for training a neural network for predicting drug-protein interactions using Keras and Tensorflow☆18Jul 9, 2018Updated 7 years ago