dmnfarrell / epitopepredictLinks
Python package and command line tool for epitope prediction
☆52Updated last year
Alternatives and similar repositories for epitopepredict
Users that are interested in epitopepredict are comparing it to the libraries listed below
Sorting:
- VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.☆44Updated 2 weeks ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆75Updated 2 years ago
- Evolutionary conservation estimation of residues or nucleotides☆57Updated 3 years ago
- A platform to do RNA science☆27Updated 4 years ago
- Convert PDB residues to their Uniprot equivalents☆17Updated 5 years ago
- A Python package for mapping sequence aligned data onto protein structures☆37Updated 4 years ago
- HLA-I ligand predictor☆43Updated 4 months ago
- An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.☆97Updated 2 years ago
- Mutation effects predicted from sequence co-variation☆72Updated 8 years ago
- Comprehensive Python client for the Uniprot REST API☆55Updated 3 months ago
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆18Updated 3 years ago
- Machine learning workflows for analyzing high-throughput protein data☆26Updated 9 years ago
- Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019☆19Updated 6 years ago
- PSIPRED Protein Secondary Structure Predictor☆58Updated 7 months ago
- ☆40Updated 4 years ago
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆31Updated 2 years ago
- a collection of colabs useful for molecular biology☆32Updated last year
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆79Updated 2 months ago
- Evolutionary velocity with protein language models☆95Updated last month
- Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.☆25Updated 2 years ago
- Automatic oligonucleotide design for PCR-based gene synthesis☆51Updated 2 months ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆67Updated 3 years ago
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆44Updated last year
- Python code to color a PDB structure based on parameters from a multiple sequence alignment☆33Updated last month
- Python package for investigating the structural context of PTMs☆28Updated last year
- Code for LazyAF pipeline☆22Updated last year
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆60Updated last month
- ☆25Updated 2 years ago
- TISIGNER: Unleash the power of synthetic biology☆28Updated 8 months ago
- Prediction of B-cell epitopes from amino acid sequences using deep neural networks.☆18Updated 3 years ago