dmnfarrell / epitopepredict
Python package and command line tool for epitope prediction
☆51Updated 9 months ago
Alternatives and similar repositories for epitopepredict:
Users that are interested in epitopepredict are comparing it to the libraries listed below
- HLA-I ligand predictor☆38Updated 4 months ago
- VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.☆42Updated 3 weeks ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆68Updated 2 years ago
- An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.☆85Updated last year
- Evolutionary conservation estimation of residues or nucleotides☆41Updated 3 years ago
- Convert PDB residues to their Uniprot equivalents☆17Updated 5 years ago
- A Python package for mapping sequence aligned data onto protein structures☆35Updated 3 years ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆83Updated last year
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆72Updated this week
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆17Updated 2 years ago
- A bioinformatics best-practice analysis pipeline for epitope prediction and annotation☆44Updated this week
- Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.☆24Updated last year
- Centroid RNA package☆19Updated 4 years ago
- a collection of colabs useful for molecular biology☆30Updated last year
- Mutation effects predicted from sequence co-variation☆64Updated 7 years ago
- Automatic oligonucleotide design for PCR-based gene synthesis☆44Updated 5 years ago
- Comprehensive Python client for the Uniprot REST API☆49Updated 8 months ago
- Code for 5UTR project☆24Updated last year
- ☆38Updated last year
- Immunoglobulin and T-Cell receptor rearrangement software☆48Updated last year
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆45Updated 5 years ago
- Code for LazyAF pipeline☆20Updated last year
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆35Updated 7 months ago
- Absolve antibody variable domain sequence analysis☆16Updated 6 years ago
- PSIPRED Protein Secondary Structure Predictor☆54Updated 5 months ago
- Python wrapper to design RNA molecules using RNAblueprint, RNARedPrint and for energy evaluations ViennaRNA, Hotknots, pKiss and Nupack.☆20Updated 6 years ago
- STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…☆26Updated last week
- HLA-II ligand predictor.☆43Updated 2 years ago
- Conservation analysis of homologous proteins with Python☆10Updated 3 years ago
- Evolutionary velocity with protein language models☆90Updated last year