Alternatives and similar repositories for DeepAttentionPan:

Users that are interested in DeepAttentionPan are comparing it to the libraries listed below

• HYsxe / ACME
  Supplementary data for the ACME algorithm
  ☆23Updated 2 years ago
• pcpLiu / DeepSeqPanII
  A sequence-based pan model for peptide-MHC II binding affinity prediction.
  ☆20Updated 2 years ago
• gopuvenkat / MHCAttnNet
  MHCAttnNet: Allele-Peptide predictions for class I & class II MHC alleles
  ☆29Updated 4 years ago
• IdoSpringer / ERGO
  ERGO is a deep learing based model for predicting TCR-peptide binding.
  ☆17Updated 2 years ago
• pcpLiu / DeepSeqPan
  A sequence-based pan model for peptide-MHC I binding affinity prediction.
  ☆25Updated 5 years ago
• churchlab / UniRep-analysis
  Analysis and figure code from Alley et al. 2019.
  ☆58Updated 2 years ago
• frankligy / DeepImmuno
  Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity
  ☆66Updated last year
• alexarnimueller / modlAMP
  Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.
  ☆57Updated last week
• jiujiezz / deephlapan
  A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides…
  ☆41Updated 2 years ago
• aqlaboratory / hsm
  Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."
  ☆71Updated 11 months ago
• mikejhuang / PhageProtVec
  Amino Acid Embedding Representation as Machine Learning Features
  ☆19Updated 6 years ago
• dmnfarrell / epitopepredict
  Python package and command line tool for epitope prediction
  ☆51Updated 7 months ago
• GfellerLab / MixMHCpred
  HLA-I ligand predictor
  ☆36Updated 3 months ago
• johli / scrambler
  Interpretation by Deep Generative Masking for Biological Sequences
  ☆37Updated 3 years ago
• uci-cbcl / HLA-bind
  Amino acid embedding and Convolutional Neural Network for HLA Class I-peptide binding prediction
  ☆25Updated 7 years ago
• LinearFold / LinearPartition
  Linear-Time Approximation of RNA Folding Partition Function and Base Pairing Probabilities
  ☆29Updated 10 months ago
• Rostlab / goPredSim
  ☆44Updated 3 months ago
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆57Updated 3 years ago
• idptools / sparrow
  Next generation sequence parameter library for proteins
  ☆29Updated 3 weeks ago
• sameerkhurana10 / DSOL_rv0.2
  deep protein solubility prediction
  ☆36Updated 5 years ago
• gf712 / AbPyTools
  Python package for analysis of antibody heavy and light chains
  ☆25Updated 4 years ago
• twoXes / awesome-structural-bioinformatics
  Structural Bioinformatics is awesome. Throw your textbook in the garbage, light the garbage can on fire, and blend the ashes into your co…
  ☆70Updated last year
• jaswindersingh2 / SPOT-RNA2
  Improved RNA Secondary Secondary Structure Prediction using Evolutionary Profile, Mutational Coupling and Two-dimensional Transfer Learni…
  ☆27Updated 3 years ago
• MedChaabane / deepRAM
  End-to-end deep learning toolkit for predicting protein binding sites and motifs.
  ☆45Updated 6 years ago
• hendrixlab / bpRNA
  bpRNA: Large-scale Annotation and Analysis of RNA Secondary Structure
  ☆47Updated last year
• psipred / FFPredGAN
  Improving protein function prediction with synthetic feature samples created by generative adversarial networks
  ☆22Updated 4 years ago
• PaccMann / paccmann_predictor
  PyTorch implementation of bimodal neural networks for drug-cell (pharmarcogenomics) and drug-protein (proteochemometrics) interaction pre…
  ☆50Updated 10 months ago
• hkmztrk / SMILESVecProteinRepresentation
  Source code for "A novel methodology on distributed representations of proteins using their interacting ligands"
  ☆27Updated 5 years ago
• elbasir / DeepCrystal
  DeepCrystal: A Deep Learning Framework for sequence-based Protein Crystallization Prediction
  ☆16Updated last year
• eliberis / parapred
  Paratope Prediction using Deep Learning
  ☆59Updated last year