jiujiezz / deephlapanLinks
A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides and the potential immunogenicity of pMHC
☆43Updated 2 years ago
Alternatives and similar repositories for deephlapan
Users that are interested in deephlapan are comparing it to the libraries listed below
Sorting:
- 🏺 Exploring novel tumor epitope identification☆37Updated 5 years ago
- MHC Class I and Class II neoantigen binding prediction☆33Updated 5 months ago
- HLA-II ligand predictor.☆45Updated 2 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆52Updated 6 years ago
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆22Updated 2 years ago
- Comparison of Adaptive Immune Receptor Repertoires☆28Updated 11 months ago
- a python package for KEGG pathway enrichment analysis with multiple gene lists.☆38Updated 8 years ago
- PRedictor of IMmunogenic Epitopes☆25Updated 3 months ago
- Code for the CRISPOR article, all data and code to create figures and analysis☆46Updated 9 years ago
- HLA-I ligand predictor☆43Updated 3 months ago
- Predicting gene expression levels from genomic sequences☆55Updated 5 years ago
- predicting peptide and TCR interaction☆20Updated 4 years ago
- Python interface to running command-line and web-based MHC binding predictors☆99Updated last year
- ☆38Updated 2 years ago
- A suite of tools for evolutionary and functional analysis of microRNA binding sites http://www.targetscan.org☆45Updated 7 years ago
- ☆33Updated 3 years ago
- pTuneos: prioritizing Tumor neoantigen from next-generation sequencing data☆38Updated 4 years ago
- Deep proteome inference from peptide profiles☆13Updated 5 years ago
- Immunoglobulin and T-Cell receptor rearrangement software☆50Updated 2 years ago
- Identify and quantify MHC eluted peptides from mass spectrometry raw data☆42Updated 2 weeks ago
- Inference of gene dependency from RNAi screening datasets.☆19Updated 5 years ago
- insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…☆29Updated 8 years ago
- Deep learning model to predict degron sequences☆19Updated 2 years ago
- Knowledge-primed neural networks☆38Updated 2 years ago
- ☆26Updated 4 years ago
- 3D hotspot mutation proximity analysis tool☆51Updated 2 years ago
- IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening☆27Updated last year
- ☆70Updated 2 years ago
- Annotation of mutated peptide sequences with published or novel potential neoantigen descriptors☆33Updated 9 months ago
- ☆49Updated 3 years ago