BGI2016 / PSSMHCpanLinks
A novel PSSM based software for predicting class I peptide-HLA binding affinity
☆17Updated 8 years ago
Alternatives and similar repositories for PSSMHCpan
Users that are interested in PSSMHCpan are comparing it to the libraries listed below
Sorting:
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆24Updated 3 years ago
- ☆13Updated 5 years ago
- A Python3-base pipeline for translated circular RNA(circRNA) identification☆18Updated 3 weeks ago
- ☆49Updated 3 years ago
- The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from c…☆20Updated 6 months ago
- ☆15Updated 3 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆51Updated 6 years ago
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆30Updated 3 years ago
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆21Updated 2 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆39Updated 6 years ago
- Integrative analysis pipeline for pooled CRISPR functional genetic screens☆31Updated last year
- Epimap processing and analysis code repository☆33Updated 3 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 4 years ago
- documentation for trackViewer☆29Updated 6 years ago
- pTuneos: prioritizing Tumor neoantigen from next-generation sequencing data☆36Updated 3 years ago
- A continually expanding collection of RNA-seq tools☆52Updated 3 weeks ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 6 years ago
- ☆20Updated 3 years ago
- direct comparison of circular and linear RNA expression☆22Updated 4 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- Decombinator v5: fast, error-correcting analysis of TCR repertoires☆27Updated last month
- ☆19Updated 7 years ago
- circtools: a modular, python-based framework for circRNA-related tools that unifies several functionalities in a single, command line dri…☆31Updated last year
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated 2 years ago
- ☆12Updated 7 years ago
- Benchmarking of aligners and variant callers for Whole Exome Sequencing data☆20Updated 6 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆19Updated 3 years ago