A novel PSSM based software for predicting class I peptide-HLA binding affinity
☆16Feb 24, 2017Updated 9 years ago
Alternatives and similar repositories for PSSMHCpan
Users that are interested in PSSMHCpan are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package implementing a simple method for CD8 T cell epitope prediction by MHC class I binding for HLA and other MHC-I molecules.☆15Sep 21, 2020Updated 5 years ago
- ☆13Aug 14, 2020Updated 5 years ago
- Annotation of mutated peptide sequences with published or novel potential neoantigen descriptors☆34Jan 27, 2026Updated 5 months ago
- Snakemake workflow for neoantigen prediction☆15Sep 7, 2023Updated 2 years ago
- ☆19Feb 20, 2018Updated 8 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆11Sep 7, 2023Updated 2 years ago
- HLA-I ligand predictor☆46Mar 19, 2026Updated 3 months ago
- Ranked vaccine peptides for personalized cancer immunotherapy☆63Jun 20, 2026Updated last week
- DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions☆12Jul 8, 2021Updated 4 years ago
- Amino acid embedding and Convolutional Neural Network for HLA Class I-peptide binding prediction☆26Aug 3, 2017Updated 8 years ago
- A Python tool for prediction MHC ligand☆36Feb 10, 2019Updated 7 years ago
- HLA typing for Sanger Based Test☆20Apr 7, 2023Updated 3 years ago
- A Data-Driven Approach to Predicting Successes and Failures of Clinical Trials☆22Oct 19, 2019Updated 6 years ago
- R package to do enrichment analysis for neoantigens☆13Feb 21, 2022Updated 4 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆26Feb 8, 2022Updated 4 years ago
- A computational workflow for exitron splicing identification☆16Updated this week
- HLA-II ligand predictor.☆47Apr 6, 2023Updated 3 years ago
- DeepNovo workflow of neoantigen discovery by personalized de novo sequencing.☆12Nov 26, 2020Updated 5 years ago
- SOAP-HLA is a flow of sequencing data analysis pipeline to type all of the HLA genes in IMGT/HLA database using capture sequenced data or…☆10Jun 3, 2020Updated 6 years ago
- Tool for Motif Deconvolution in large HLA-II ligand datasets without the need of prior alignment.☆15Feb 17, 2025Updated last year
- ☆40Dec 29, 2022Updated 3 years ago
- LAVA: Lightweight Assignment of Variant Alleles☆17Dec 27, 2017Updated 8 years ago
- Splicing Neo Antigen Finder (SNAF) is an easy-to-use Python package to identify splicing-derived tumor neoantigens from RNA sequencing da…☆56Feb 18, 2026Updated 4 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Analyze apache log and display histograms and stats about the requests, in order to identify main problematic urls☆17Nov 10, 2025Updated 7 months ago
- Alt-azimuth telescope mount controlled by a Raspberry Pi and Arduinos☆13Jan 3, 2020Updated 6 years ago
- Singularity port of HLA typing based on an input exome BAM file and is currently infers infers alleles for the three major MHC class I (…☆14Jan 15, 2017Updated 9 years ago
- DEPRECATED. This tool has been superseded by https://github.com/griffithlab/pVACtools☆60Apr 16, 2019Updated 7 years ago
- Simple matching of HTS samples based on HLA typing☆14Jan 4, 2017Updated 9 years ago
- Derivative of Ron Cain's Small C Compiler☆15Aug 1, 2019Updated 6 years ago
- Immunogenetic Data Tools related to HLA, GLStrings, Linkage Disequilibrium☆11Jun 14, 2023Updated 3 years ago
- Virtual Pharmacist is a web tool that interprets personal genome for the impact of genetic variation on drug response. It can take varian…☆13Nov 16, 2015Updated 10 years ago
- R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping…☆14Jan 31, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A single package (command line tool and library) in Java to validate, simulate, translate and analyse NeuroML 2 models☆12May 19, 2026Updated last month
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆22Jun 22, 2026Updated last week
- Predicting TCR antigen recognition using statistical potentials☆26Jun 22, 2026Updated last week
- Flat-file SQL (fSQL) is a set of classes available in PHP that allows users without SQL database servers to select and manipulate flat-fi…☆17Mar 26, 2022Updated 4 years ago
- Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing☆17Jan 19, 2018Updated 8 years ago
- Peptide-MHC I binding affinity prediction☆261Jun 10, 2026Updated 3 weeks ago
- Medical calculator for intensive care unit☆13May 11, 2026Updated last month