A novel PSSM based software for predicting class I peptide-HLA binding affinity
☆17Feb 24, 2017Updated 9 years ago
Alternatives and similar repositories for PSSMHCpan
Users that are interested in PSSMHCpan are comparing it to the libraries listed below
Sorting:
- ☆13Aug 14, 2020Updated 5 years ago
- R package implementing a simple method for CD8 T cell epitope prediction by MHC class I binding for HLA and other MHC-I molecules.☆15Sep 21, 2020Updated 5 years ago
- Annotation of mutated peptide sequences with published or novel potential neoantigen descriptors☆34Jan 27, 2026Updated last month
- Snakemake workflow for neoantigen prediction☆15Sep 7, 2023Updated 2 years ago
- Ranked vaccine peptides for personalized cancer immunotherapy☆61Feb 10, 2026Updated 2 weeks ago
- DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions☆11Jul 8, 2021Updated 4 years ago
- ☆19Feb 20, 2018Updated 8 years ago
- HLA-I ligand predictor☆43Sep 24, 2025Updated 5 months ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆26Feb 8, 2022Updated 4 years ago
- ☆11Sep 7, 2023Updated 2 years ago
- Amino acid embedding and Convolutional Neural Network for HLA Class I-peptide binding prediction☆26Aug 3, 2017Updated 8 years ago
- DeepNovo workflow of neoantigen discovery by personalized de novo sequencing.☆12Nov 26, 2020Updated 5 years ago
- R package to do enrichment analysis for neoantigens☆13Feb 21, 2022Updated 4 years ago
- A computational workflow for exitron splicing identification☆14Aug 30, 2024Updated last year
- DEPRECATED. This tool has been superseded by https://github.com/griffithlab/pVACtools☆61Apr 16, 2019Updated 6 years ago
- HLA typing for Sanger Based Test☆19Apr 7, 2023Updated 2 years ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆20Aug 9, 2022Updated 3 years ago
- LAVA: Lightweight Assignment of Variant Alleles☆17Dec 27, 2017Updated 8 years ago
- A Data-Driven Approach to Predicting Successes and Failures of Clinical Trials☆21Oct 19, 2019Updated 6 years ago
- 📝 [Paper] TCRen: predicting TCR-peptide recognition based on residue-level pairwise statistical potential☆24Sep 30, 2025Updated 5 months ago
- ☆23May 31, 2022Updated 3 years ago
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆22Feb 17, 2023Updated 3 years ago
- HLA-II ligand predictor.☆46Apr 6, 2023Updated 2 years ago
- Splicing Neo Antigen Finder (SNAF) is an easy-to-use Python package to identify splicing-derived tumor neoantigens from RNA sequencing da…☆52Feb 18, 2026Updated last week
- MODELLER-based, anchor restrained, Peptide-MHC Modelling pipeline☆27Feb 16, 2026Updated 2 weeks ago
- Peptide-MHC I binding affinity prediction☆232Feb 17, 2026Updated 2 weeks ago
- Next-generation sequencing analysis pipelines & scrips☆10Nov 25, 2020Updated 5 years ago
- TCRGP, a novel Gaussian process method that can predict if TCRs recognize certain epitopes. This method can utilize different CDR sequenc…☆30Jan 31, 2023Updated 3 years ago
- Code for "T Cell Receptor Specificity Prediction with Bimodal Attention Networks" (https://doi.org/10.1093/bioinformatics/btab294, ISMB 2…☆30Jul 12, 2025Updated 7 months ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆29Feb 12, 2021Updated 5 years ago
- Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.☆25Nov 17, 2023Updated 2 years ago
- Overview of GDC Harmonization Workflows☆36May 16, 2023Updated 2 years ago
- Predict mutated T-cell epitopes from sequencing data☆30Feb 18, 2025Updated last year
- Features Based Conformational Clustering of MD trajectories. See details at:☆10Nov 20, 2025Updated 3 months ago
- Personalized cancer epitope discovery and peptide vaccine prediction pipeline☆30Nov 14, 2017Updated 8 years ago
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆30Aug 29, 2022Updated 3 years ago
- A Python tool for prediction MHC ligand☆34Feb 10, 2019Updated 7 years ago
- iScore: an MPI supported software for ranking protein-protein docking models based on a random walk graph kernel and support vector machi…☆31Jun 25, 2022Updated 3 years ago
- Probabilistic HLA typing☆35Aug 31, 2019Updated 6 years ago