BGI2016 / PSSMHCpanLinks
A novel PSSM based software for predicting class I peptide-HLA binding affinity
☆17Updated 8 years ago
Alternatives and similar repositories for PSSMHCpan
Users that are interested in PSSMHCpan are comparing it to the libraries listed below
Sorting:
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆26Updated 4 years ago
- ☆13Updated 5 years ago
- ☆48Updated 3 years ago
- ☆23Updated 3 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆52Updated 6 years ago
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆22Updated 2 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆29Updated 4 years ago
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆30Updated 3 years ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆39Updated 7 years ago
- 🏺 Exploring novel tumor epitope identification☆38Updated 5 years ago
- pTuneos: prioritizing Tumor neoantigen from next-generation sequencing data☆38Updated 4 years ago
- ☆15Updated 3 years ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆20Updated 3 years ago
- ☆12Updated 7 years ago
- Integrative analysis pipeline for pooled CRISPR functional genetic screens☆32Updated 2 years ago
- A Python3-base pipeline for translated circular RNA(circRNA) identification☆19Updated 4 months ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 3 years ago
- ☆19Updated 7 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated 2 years ago
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆50Updated 6 years ago
- R package for analysing proteomics data☆50Updated 2 years ago
- ChIP-Atlas: Browse and analyze all public ChIP/DNase-seq data on your browser☆80Updated last month
- The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from c…☆20Updated 9 months ago
- Computational correction of copy-number effect in CRISPR-Cas9 essentiality screens☆32Updated 6 years ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆24Updated 2 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆30Updated 6 years ago
- Snakemake workflow for neoantigen prediction☆14Updated 2 years ago
- Benchmarking of aligners and variant callers for Whole Exome Sequencing data☆20Updated 7 years ago
- A continually expanding collection of RNA-seq tools☆53Updated 4 months ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 5 years ago