A novel PSSM based software for predicting class I peptide-HLA binding affinity
☆16Feb 24, 2017Updated 9 years ago
Alternatives and similar repositories for PSSMHCpan
Users that are interested in PSSMHCpan are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package implementing a simple method for CD8 T cell epitope prediction by MHC class I binding for HLA and other MHC-I molecules.☆15Sep 21, 2020Updated 5 years ago
- ☆13Aug 14, 2020Updated 6 years ago
- Annotation of mutated peptide sequences with published or novel potential neoantigen descriptors☆34Jan 27, 2026Updated 7 months ago
- Snakemake workflow for neoantigen prediction☆15Sep 7, 2023Updated 2 years ago
- Ranked vaccine peptides for personalized cancer immunotherapy☆63Updated this week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆19Feb 20, 2018Updated 8 years ago
- ☆11Sep 7, 2023Updated 2 years ago
- HLA-I ligand predictor☆47Mar 19, 2026Updated 5 months ago
- DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions☆12Jul 8, 2021Updated 5 years ago
- Amino acid embedding and Convolutional Neural Network for HLA Class I-peptide binding prediction☆26Aug 3, 2017Updated 9 years ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆26Feb 8, 2022Updated 4 years ago
- HLA typing for Sanger Based Test☆20Apr 7, 2023Updated 3 years ago
- A Data-Driven Approach to Predicting Successes and Failures of Clinical Trials☆22Oct 19, 2019Updated 6 years ago
- R package to do enrichment analysis for neoantigens☆13Feb 21, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A computational workflow for exitron splicing identification☆16Jul 17, 2026Updated last month
- HLA-II ligand predictor.☆51Updated this week
- Immunogenetic Data Tools related to HLA, GLStrings, Linkage Disequilibrium☆12Updated this week
- Probabilistic HLA typing☆35Aug 31, 2019Updated 7 years ago
- DeepNovo workflow of neoantigen discovery by personalized de novo sequencing.☆12Nov 26, 2020Updated 5 years ago
- SOAP-HLA is a flow of sequencing data analysis pipeline to type all of the HLA genes in IMGT/HLA database using capture sequenced data or…☆10Jun 3, 2020Updated 6 years ago
- Tool for Motif Deconvolution in large HLA-II ligand datasets without the need of prior alignment.☆15Feb 17, 2025Updated last year
- LAVA: Lightweight Assignment of Variant Alleles☆17Dec 27, 2017Updated 8 years ago
- ☆41Dec 29, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Splicing Neo Antigen Finder (SNAF) is an easy-to-use Python package to identify splicing-derived tumor neoantigens from RNA sequencing da…☆55Feb 18, 2026Updated 6 months ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆22Jun 22, 2026Updated 2 months ago
- Alt-azimuth telescope mount controlled by a Raspberry Pi and Arduinos☆13Jan 3, 2020Updated 6 years ago
- Singularity port of HLA typing based on an input exome BAM file and is currently infers infers alleles for the three major MHC class I (…☆15Jan 15, 2017Updated 9 years ago
- Derivative of Ron Cain's Small C Compiler☆15Aug 1, 2019Updated 7 years ago
- Code for "T Cell Receptor Specificity Prediction with Bimodal Attention Networks" (https://doi.org/10.1093/bioinformatics/btab294, ISMB 2…☆31Jul 12, 2025Updated last year
- Medical calculator for intensive care unit☆14May 11, 2026Updated 3 months ago
- DEPRECATED. This tool has been superseded by https://github.com/griffithlab/pVACtools☆60Apr 16, 2019Updated 7 years ago
- Virtual Pharmacist is a web tool that interprets personal genome for the impact of genetic variation on drug response. It can take varian…☆13Nov 16, 2015Updated 10 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A single package (command line tool and library) in Java to validate, simulate, translate and analyse NeuroML 2 models☆13May 19, 2026Updated 3 months ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆14Nov 21, 2019Updated 6 years ago
- Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing☆17Jan 19, 2018Updated 8 years ago
- Peptide-MHC I binding affinity prediction☆273Updated this week
- ☆22Updated this week
- Integrative analysis for scRNA-seq and scTCR-/scBCR-seq data☆22Updated this week
- Html5 based webcam heart rate tracking☆16Dec 9, 2016Updated 9 years ago