BGI2016 / PSSMHCpan
A novel PSSM based software for predicting class I peptide-HLA binding affinity
☆17Updated 7 years ago
Related projects ⓘ
Alternatives and complementary repositories for PSSMHCpan
- ☆46Updated 2 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 3 years ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆24Updated 2 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 3 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆26Updated 3 months ago
- ☆18Updated 6 years ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆38Updated 6 years ago
- Processing of single cell RNAseq data for the recovery of TCRs in python☆26Updated 3 years ago
- BAGEL software☆26Updated 9 months ago
- processes GoT amplicon data and generates a table of metrics☆26Updated 2 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated last month
- Epimap processing and analysis code repository☆33Updated 2 years ago
- ☆13Updated 4 years ago
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆29Updated 2 years ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆28Updated 3 years ago
- RAGE-seq scripts☆18Updated 3 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆26Updated 3 years ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆17Updated 2 years ago
- direct comparison of circular and linear RNA expression☆20Updated 3 years ago
- ☆14Updated 2 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆27Updated 4 years ago
- pTuneos: prioritizing Tumor neoantigen from next-generation sequencing data☆34Updated 3 years ago
- ☆10Updated 4 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 5 years ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆21Updated last year
- Next-Gen Sequencing tools from the Horvath Lab☆39Updated last week
- 🏺 Exploring novel tumor epitope identification☆35Updated 4 years ago
- CLIP-seq Analysis of Multi-mapped reads☆28Updated 3 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆26Updated last year
- ☆33Updated 4 months ago