Fast and accurate in silico inference of HLA genotypes from RNA-seq
☆160Aug 20, 2024Updated last year
Alternatives and similar repositories for arcasHLA
Users that are interested in arcasHLA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Count HLA alleles in single-cell RNA-seq data☆64Nov 5, 2021Updated 4 years ago
- Using k-mers to call HLA alleles in RNA sequencing data☆23Jul 26, 2018Updated 7 years ago
- In-silico method written in Python and R to determine HLA genotypes of a sample. seq2HLA takes standard RNA-Seq sequence reads in fastq f…☆52Aug 9, 2025Updated 10 months ago
- Github for files currently published in the IPD-IMGT/HLA FTP Directory hosted at the European Bioinformatics Institute☆262Apr 17, 2026Updated 2 months ago
- xHLA: Fast and accurate HLA typing from short read sequence data☆117Oct 13, 2023Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Precision HLA typing from next-generation sequencing data☆219May 20, 2026Updated last month
- Fast HLA type inference from whole-genome data☆146Apr 3, 2025Updated last year
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆59May 19, 2026Updated last month
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆29Oct 11, 2019Updated 6 years ago
- TCR and BCR assembly from RNA-seq data☆355Jun 21, 2026Updated last week
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆28Sep 13, 2023Updated 2 years ago
- ☆13May 30, 2023Updated 3 years ago
- Reference data: BED files, genes, transcripts, variations.☆91Nov 28, 2017Updated 8 years ago
- 📚 Tools and databases for analyzing HLA and VDJ genes.☆242Feb 12, 2026Updated 4 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Aug 10, 2021Updated 4 years ago
- epiTCR: a highly sensitive predictor for TCR–peptide binding☆16Aug 15, 2025Updated 10 months ago
- Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.☆118Sep 2, 2024Updated last year
- ☆48Jul 7, 2022Updated 3 years ago
- Ranked vaccine peptides for personalized cancer immunotherapy☆63Jun 20, 2026Updated 2 weeks ago
- T1K is a versatile methods to genotype highly polymorphic genes (e.g. KIR, HLA) with bulk or single-cell RNA-seq, WGS or WES data.☆105Dec 21, 2025Updated 6 months ago
- Interpretation of cell states using reference single-cell maps☆323Dec 19, 2025Updated 6 months ago
- STAR-Fusion codebase☆254Apr 18, 2026Updated 2 months ago
- flexible CDR based distance metrics☆73Dec 16, 2025Updated 6 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆29Feb 12, 2021Updated 5 years ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆70Jun 17, 2026Updated 2 weeks ago
- Compute generation probabilities of CDR3 amino acid and nucleotide sequences☆67Nov 18, 2025Updated 7 months ago
- RAGE-seq scripts☆18Aug 30, 2021Updated 4 years ago
- Python package to annotate and visualize gene fusions.☆67Apr 14, 2026Updated 2 months ago
- Kourami: Graph-guided assembly for HLA alleles☆41May 21, 2019Updated 7 years ago
- Run multiple Pipeline5 instances at once☆11Jun 6, 2025Updated last year
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆27Oct 18, 2022Updated 3 years ago
- A toolkit for single-cell immune profiling☆371Jun 27, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆14May 15, 2024Updated 2 years ago
- Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing☆17Jan 19, 2018Updated 8 years ago
- Bioinformatics pipeline for selecting patient-specific cancer neoantigen vaccines☆94Sep 15, 2025Updated 9 months ago
- Fast and accurate gene fusion detection from RNA-Seq data☆270Sep 21, 2025Updated 9 months ago
- Comparison of Adaptive Immune Receptor Repertoires☆30Jan 29, 2025Updated last year
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Jun 6, 2024Updated 2 years ago
- ☆19Jun 23, 2020Updated 6 years ago