RabadanLab / arcasHLALinks
Fast and accurate in silico inference of HLA genotypes from RNA-seq
☆143Updated last year
Alternatives and similar repositories for arcasHLA
Users that are interested in arcasHLA are comparing it to the libraries listed below
Sorting:
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated 2 years ago
- ☆120Updated 2 years ago
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆115Updated 2 years ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆95Updated 4 years ago
- nucleosome calling using ATAC-seq☆108Updated 4 years ago
- TraCeR - reconstruction of T cell receptor sequences from single-cell RNAseq data☆130Updated last year
- mgatk: mitochondrial genome analysis toolkit☆108Updated 9 months ago
- Basic workflow for ATAC-seq analysis☆88Updated last year
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆103Updated 2 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆118Updated 2 weeks ago
- Links to ATAC-seq analysis tools☆71Updated 4 years ago
- Estimate locus specific human LINE-1 expression.☆39Updated last month
- A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …☆72Updated this week
- A short tutorial on how to use RSEM☆138Updated 5 years ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated 11 months ago
- Microsatellite instability (MSI) detection for tumor only data.☆110Updated last year
- CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots☆95Updated last year
- ENCODE Uniform processing pipeline for ChIP-seq☆123Updated 5 years ago
- In-silico method written in Python and R to determine HLA genotypes of a sample. seq2HLA takes standard RNA-Seq sequence reads in fastq f…☆49Updated 2 months ago
- Tools for working with BUS files☆102Updated 5 months ago
- ☆89Updated 3 months ago
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆62Updated 4 years ago
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆118Updated 3 years ago
- Check strandedness of RNA-Seq fastq files☆125Updated 3 years ago
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆78Updated 4 months ago
- Notes on ChIP-seq and other-seq-related tools☆26Updated 3 months ago
- a snakemake pipeline to process ChIP-seq files from GEO or in-house☆110Updated 5 years ago
- ATAC-seq snakemake pipeline☆88Updated 5 years ago
- FAN-C: Framework for the ANalysis of C-like data☆120Updated last year
- ☆116Updated 2 years ago