RabadanLab / arcasHLA
Fast and accurate in silico inference of HLA genotypes from RNA-seq
☆121Updated 3 months ago
Related projects ⓘ
Alternatives and complementary repositories for arcasHLA
- Generate IGV style locus tracks from bigWig files in R☆141Updated 3 weeks ago
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆104Updated last year
- ☆103Updated last year
- Check strandedness of RNA-Seq fastq files☆115Updated 2 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆74Updated last year
- A short tutorial on how to use RSEM☆134Updated 4 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆103Updated 4 months ago
- ENCODE Uniform processing pipeline for ChIP-seq☆120Updated 4 years ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆93Updated 3 years ago
- nucleosome calling using ATAC-seq☆106Updated 3 years ago
- ASCAT R package☆170Updated 3 weeks ago
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆103Updated 2 weeks ago
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆208Updated 5 months ago
- ☆116Updated last year
- Annotates variants in MAF with OncoKB annotation.☆123Updated last month
- ☆71Updated 6 months ago
- ☆56Updated 6 months ago
- Publication quality NGS track plotting☆108Updated 2 years ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆99Updated 2 years ago
- RNA-Seq analysis workflow☆105Updated 3 years ago
- Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream …☆81Updated last month
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆62Updated 3 years ago
- Detecting sites of genomic enrichment☆187Updated last year
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆134Updated this week
- Finder of Somatic Fusion Genes in RNA-seq data☆142Updated last year
- In-silico method written in Python and R to determine HLA genotypes of a sample. seq2HLA takes standard RNA-Seq sequence reads in fastq f…☆47Updated last year
- ☆120Updated 5 years ago
- WGBS/NOMe-seq Data Processing & Differential Methylation Analysis☆137Updated last year
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆94Updated last week
- A toolset for profiling alternative splicing events in RNA-Seq data.☆79Updated 4 months ago