RabadanLab / arcasHLA
Fast and accurate in silico inference of HLA genotypes from RNA-seq
☆126Updated 7 months ago
Alternatives and similar repositories for arcasHLA:
Users that are interested in arcasHLA are comparing it to the libraries listed below
- ENCODE Uniform processing pipeline for ChIP-seq☆123Updated 5 years ago
- ☆117Updated last year
- Analysis pipeline for ATAC-seq data☆52Updated last year
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆108Updated 2 years ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆94Updated 3 years ago
- ☆129Updated 6 years ago
- Check strandedness of RNA-Seq fastq files☆121Updated 2 years ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆101Updated 2 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated last year
- Tools for single-cell data processing☆123Updated 10 months ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆112Updated 2 months ago
- Basic workflow for ATAC-seq analysis☆76Updated last year
- chromatin Variability Across Regions (of the genome!)☆170Updated 8 months ago
- Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream …☆89Updated 2 weeks ago
- ☆58Updated 10 months ago
- a snakemake pipeline to process ChIP-seq files from GEO or in-house☆107Updated 4 years ago
- nucleosome calling using ATAC-seq☆106Updated 4 years ago
- Publication quality NGS track plotting☆112Updated 2 years ago
- In-silico method written in Python and R to determine HLA genotypes of a sample. seq2HLA takes standard RNA-Seq sequence reads in fastq f…☆48Updated last year
- Detecting sites of genomic enrichment☆189Updated last year
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆91Updated 2 years ago
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆107Updated last month
- Generate IGV style locus tracks from bigWig files in R☆157Updated 5 months ago
- ☆64Updated last year
- ASCAT R package☆178Updated 2 weeks ago
- Microsatellite instability (MSI) detection for tumor only data.☆103Updated 11 months ago
- A short tutorial on how to use RSEM☆136Updated 4 years ago
- Analysis pipeline for ATAC-seq Data☆60Updated 3 years ago
- Pipeline for processing inDrops sequencing data☆75Updated 6 years ago
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆147Updated 3 weeks ago