RabadanLab / arcasHLALinks
Fast and accurate in silico inference of HLA genotypes from RNA-seq
☆134Updated 9 months ago
Alternatives and similar repositories for arcasHLA
Users that are interested in arcasHLA are comparing it to the libraries listed below
Sorting:
- ☆116Updated last year
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated last year
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆109Updated 2 years ago
- ENCODE Uniform processing pipeline for ChIP-seq☆123Updated 5 years ago
- Check strandedness of RNA-Seq fastq files☆124Updated 2 years ago
- ☆73Updated last month
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆113Updated 4 months ago
- A short tutorial on how to use RSEM☆136Updated 5 years ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆94Updated 4 years ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆101Updated 2 years ago
- SNV calling from single cell sequencing☆100Updated 6 months ago
- Analysis pipeline for ATAC-seq data☆60Updated last year
- ☆91Updated 2 weeks ago
- RNA-Seq analysis workflow☆104Updated 3 years ago
- ☆62Updated last year
- ☆136Updated 6 years ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆76Updated 3 years ago
- Publication quality NGS track plotting☆113Updated 2 years ago
- nucleosome calling using ATAC-seq☆106Updated 4 years ago
- ASCAT R package☆181Updated 2 months ago
- Generate IGV style locus tracks from bigWig files in R☆162Updated 7 months ago
- Basic workflow for ATAC-seq analysis☆78Updated last year
- Tools for single-cell data processing☆124Updated last year
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆62Updated 4 years ago
- fork of RSeQC python RNAseq metrics suit of tools☆48Updated 6 years ago
- Links to ATAC-seq analysis tools☆66Updated 3 years ago
- a snakemake pipeline to process ChIP-seq files from GEO or in-house☆108Updated 5 years ago
- AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and …☆147Updated 11 months ago
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆73Updated 2 weeks ago
- optimization of ribosome P-site positioning in ribosome profiling data☆52Updated 3 months ago