pcpLiu / DeepSeqPanIILinks
A sequence-based pan model for peptide-MHC II binding affinity prediction.
☆21Updated 3 years ago
Alternatives and similar repositories for DeepSeqPanII
Users that are interested in DeepSeqPanII are comparing it to the libraries listed below
Sorting:
- MHCAttnNet: Allele-Peptide predictions for class I & class II MHC alleles☆30Updated 4 years ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆70Updated 2 years ago
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆41Updated last year
- Python package and command line tool for epitope prediction☆51Updated 11 months ago
- A sequence-based pan model for peptide-MHC I binding affinity prediction.☆26Updated 6 years ago
- ☆25Updated last year
- Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.☆61Updated 4 months ago
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆18Updated 2 years ago
- ☆40Updated 3 years ago
- Supplementary data for the ACME algorithm☆23Updated 2 years ago
- Neural networks for deep mutational scanning data☆69Updated last month
- iFeatureOmega is a comprehensive platform for generating, analyzing and visualizing more than 170 representations for biological sequence…☆34Updated last year
- Peptide library design☆23Updated 4 years ago
- Evolutionary velocity with protein language models☆93Updated last year
- MHC-peptide class II interaction prediction, binding, presentation☆23Updated 3 years ago
- deep protein solubility prediction☆38Updated 6 years ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆59Updated 4 years ago
- ☆12Updated last month
- Pytorch implementation of DeepNovoV2, a state-of-the-art de novo peptide sequencing model.☆23Updated 6 years ago
- HLA-I ligand predictor☆41Updated 6 months ago
- This repository contains the stand-alone tool for MusiteDeep server☆34Updated 4 years ago
- Prediction of binding residues for metal ions, nucleic acids, and small molecules.☆32Updated 7 months ago
- Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python☆30Updated 2 years ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆89Updated last year
- Collisional cross-section prediction for modified and multiconformational peptides☆12Updated 2 months ago
- Collecting AMP MIC data from different sources, then running a GAN to output promising sequences☆80Updated 11 months ago
- https://www.nature.com/articles/s41598-020-74091-z#Tab1☆40Updated last year
- Analysis and figure code from Alley et al. 2019.☆59Updated 2 years ago
- Multi-Species Codon Optimization Engine☆27Updated last year
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago