Alternatives and similar repositories for DeepSeqPanII

Users that are interested in DeepSeqPanII are comparing it to the libraries listed below

• HYsxe / ACME
  Supplementary data for the ACME algorithm
  ☆23Updated 2 years ago
• frankligy / DeepImmuno
  Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity
  ☆69Updated 2 years ago
• s6juncheng / BERTMHC
  MHC-peptide class II interaction prediction, binding, presentation
  ☆22Updated 3 years ago
• GreiffLab / manuscript_ab_epitope_interaction
  ☆25Updated last year
• xinyu-dev / annotate_v
  Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python
  ☆30Updated 2 years ago
• IdoSpringer / ERGO
  ERGO is a deep learing based model for predicting TCR-peptide binding.
  ☆17Updated 2 years ago
• gopuvenkat / MHCAttnNet
  MHCAttnNet: Allele-Peptide predictions for class I & class II MHC alleles
  ☆29Updated 4 years ago
• dmnfarrell / epitopepredict
  Python package and command line tool for epitope prediction
  ☆51Updated 10 months ago
• johli / scrambler
  Interpretation by Deep Generative Masking for Biological Sequences
  ☆37Updated 3 years ago
• gitter-lab / nn4dms
  Neural networks for deep mutational scanning data
  ☆69Updated 3 weeks ago
• denisbeslic / denovopipeline
  Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.
  ☆40Updated last year
• GfellerLab / MixMHCpred
  HLA-I ligand predictor
  ☆40Updated 6 months ago
• lasersonlab / pepsyn
  Peptide library design
  ☆23Updated 4 years ago
• yanzhanglab / Graph2GO
  Graph-based representation learning method for protein function prediction
  ☆24Updated 4 years ago
• ShenLab / gMVP
  ☆21Updated 2 years ago
• Rostlab / ProNA2020
  ProNA2020: System predicting protein-DNA, protein-RNA and protein-protein binding sites from sequence
  ☆14Updated 4 years ago
• matsengrp / vampire
  🧛 Deep generative models for TCR sequences 🧛
  ☆17Updated 3 years ago
• realbigws / Predict_Property
  Predict protein local properties using sequence or profile information.
  ☆23Updated 4 years ago
• moss-lab / ScanFold
  ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…
  ☆19Updated 2 years ago
• duolinwang / MusiteDeep_web
  This repository contains the stand-alone tool for MusiteDeep server
  ☆34Updated 4 years ago
• FPPGroup / CodonBERT
  CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.
  ☆38Updated 9 months ago
• kaistomics / DeepNeo
  identification of immunogenic neoepitopes
  ☆12Updated 2 years ago
• Abalign / Abalign
  A visualization software for antibody multi sequence alignment
  ☆18Updated last year
• schumacherlab / STAPLER
  STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…
  ☆26Updated 2 months ago
• alexarnimueller / modlAMP
  Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.
  ☆60Updated 3 months ago
• nleroy917 / optipyzer
  Multi-Species Codon Optimization Engine
  ☆27Updated last year
• bioinformatics-sannio / ncrna-deep
  Scripts and datasets to reproduce the experiment of the paper "Exploring non-coding RNA functions with deep learning tools"
  ☆15Updated 4 years ago
• pth1993 / DeepCE
  A deep learning framework for high-throughput mechanism-driven phenotype screening
  ☆50Updated 4 years ago
• csi-greifflab / manuscript_insilico_antibody_generation
  ☆23Updated 3 years ago
• KarchinLab / mhcnuggets
  MHC Class I and Class II neoantigen binding prediction
  ☆30Updated 2 years ago