pcpLiu / DeepSeqPanII
A sequence-based pan model for peptide-MHC II binding affinity prediction.
☆20Updated 2 years ago
Alternatives and similar repositories for DeepSeqPanII:
Users that are interested in DeepSeqPanII are comparing it to the libraries listed below
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆64Updated last year
- Python package and command line tool for epitope prediction☆49Updated 5 months ago
- MHC-peptide class II interaction prediction, binding, presentation☆21Updated 2 years ago
- Supplementary data for the ACME algorithm☆23Updated 2 years ago
- Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python☆28Updated last year
- iFeatureOmega is a comprehensive platform for generating, analyzing and visualizing more than 170 representations for biological sequence…☆28Updated last year
- Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.☆54Updated 2 years ago
- Prediction of binding residues for metal ions, nucleic acids, and small molecules.☆32Updated last month
- MHCAttnNet: Allele-Peptide predictions for class I & class II MHC alleles☆29Updated 3 years ago
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆17Updated 2 years ago
- HLA-I ligand predictor☆30Updated 3 weeks ago
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆38Updated 10 months ago
- A deep learning framework for high-throughput mechanism-driven phenotype screening☆47Updated 3 years ago
- ☆24Updated last year
- Collecting AMP MIC data from different sources, then running a GAN to output promising sequences☆65Updated 5 months ago
- Mutation effects predicted from sequence co-variation☆61Updated 7 years ago
- A sequence-based pan model for peptide-MHC I binding affinity prediction.☆25Updated 5 years ago
- 🧛 Deep generative models for TCR sequences 🧛☆16Updated 2 years ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆56Updated 3 years ago
- ☆20Updated 2 years ago
- Neural networks for deep mutational scanning data☆66Updated 2 months ago
- ☆23Updated 3 years ago
- Graph-based representation learning method for protein function prediction☆24Updated 4 years ago
- Evolutionary velocity with protein language models☆84Updated last year
- Peptide library design☆20Updated 4 years ago
- Evolutionary conservation estimation of residues or nucleotides☆33Updated 2 years ago
- ☆13Updated 3 years ago
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆16Updated 2 years ago
- Multi-Species Codon Optimization Engine☆28Updated last year