FRED-2 / Fred2
Python-based framework for computational immunomics
☆40Updated 3 years ago
Alternatives and similar repositories for Fred2:
Users that are interested in Fred2 are comparing it to the libraries listed below
- Python interface to amino acid properties and IEDB☆56Updated 6 months ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆50Updated 5 years ago
- Platform for integrating genomic analysis with Jupyter Notebooks.☆44Updated 8 months ago
- Scalable RNA-seq analysis☆73Updated 4 years ago
- A bioinformatics best-practice analysis pipeline for epitope prediction and annotation☆44Updated this week
- 3D hotspot mutation proximity analysis tool☆47Updated 2 years ago
- Digital Expression Explorer 2 (DEE2): a repository of uniformly processed RNA-seq data☆40Updated this week
- ☆19Updated 2 years ago
- Efficient handling of FASTQ files from Python☆51Updated 7 months ago
- Predict mutated T-cell epitopes from sequencing data☆30Updated last month
- Python library and scripts for retrieval and storage of genomics data in HDF5 format☆26Updated 6 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆50Updated 4 months ago
- Curated collection of open-source bioinformatics tools☆28Updated 6 years ago
- Biological Graphic tool in Python☆34Updated 4 years ago
- MetaSRA: normalized sample-specific metadata for the Sequence Read Archive☆43Updated last year
- A pipeline to rapidly detect exogenous DNA integration sites using DNA or RNA paired-end sequencing data☆12Updated last year
- UC Santa Cruz Computational Genomics Lab's Toil-based RNA-seq pipeline☆40Updated 4 years ago
- B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction☆58Updated last week
- Project Manager for NGS data analysis☆30Updated 2 years ago
- conda recipes for genomic data☆85Updated 3 years ago
- WDL plugin for pytest☆48Updated last year
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆16Updated 7 years ago
- integrated RNA-seq Analysis Pipeline☆84Updated 6 years ago
- Automatic Packaging and Distribution of Bioinformatics Pipelines☆26Updated 7 years ago
- small RNA analysis from NGS data☆37Updated 7 months ago
- ClinVar Mapping and Annotation Toolkit☆19Updated last month
- JAMM Peak Finder for Sequencing Datasets☆29Updated 5 years ago
- ☆13Updated 7 years ago
- Scripts, utilities and programs for genomic bioinformatics.☆82Updated this week
- Proteomics label-free quantification (LFQ) analysis pipeline☆35Updated 3 months ago