FRED-2 / Fred2Links
Python-based framework for computational immunomics
☆40Updated 4 years ago
Alternatives and similar repositories for Fred2
Users that are interested in Fred2 are comparing it to the libraries listed below
Sorting:
- Predict mutated T-cell epitopes from sequencing data☆30Updated 6 months ago
- MetaSRA: normalized sample-specific metadata for the Sequence Read Archive☆44Updated 3 weeks ago
- Python interface to amino acid properties and IEDB☆57Updated 10 months ago
- Platform for integrating genomic analysis with Jupyter Notebooks.☆44Updated last month
- Library for manipulating genomic variants and predicting their effects☆85Updated last year
- Automatic Packaging and Distribution of Bioinformatics Pipelines☆26Updated 7 years ago
- ☆19Updated 3 years ago
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆16Updated 7 years ago
- Efficient handling of FASTQ files from Python☆51Updated 3 weeks ago
- MAVE-NN: genotype-phenotype maps from multiplex assays of variant effect☆28Updated last week
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆51Updated 5 years ago
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆36Updated 3 years ago
- Scalable RNA-seq analysis☆73Updated 4 years ago
- ☆28Updated 6 years ago
- 3D hotspot mutation proximity analysis tool☆47Updated 2 years ago
- This repository is the working directory for the Garnet-Forest bundle of python scripts for analyzing diverse forms of 'omic' data in a n…☆31Updated 6 years ago
- draw sequence logos tailored to deep mutational scanning (DMS) data☆12Updated last year
- Utilities for analyzing mutations and neoepitopes in patient cohorts☆20Updated 7 years ago
- Curated collection of open-source bioinformatics tools☆28Updated 6 years ago
- A Python package for gene network analysis☆32Updated 3 years ago
- ☆41Updated 7 years ago
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆61Updated 2 years ago
- Fishers Exact Test for Python (Cython)☆66Updated 5 months ago
- Digital Expression Explorer 2 (DEE2): a repository of uniformly processed RNA-seq data☆42Updated 2 months ago
- paplot creates various dynamic and interactive reports for cancer genome analysis.☆25Updated 2 years ago
- Demonstrating best practices for bioinformatics command line tools☆26Updated 5 years ago
- WDL plugin for pytest☆48Updated 2 years ago
- Data visualization and analysis framework focused on phenotype-molecular data integration at cohort level.☆33Updated this week
- A metadata commons to store research software metadata☆41Updated this week
- Genepy is an open source utils package covering a range of useful functions for large scale genomics data analysis in python☆21Updated 2 years ago