FRED-2 / Fred2Links
Python-based framework for computational immunomics
☆40Updated 3 years ago
Alternatives and similar repositories for Fred2
Users that are interested in Fred2 are comparing it to the libraries listed below
Sorting:
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆50Updated 5 years ago
- Python interface to amino acid properties and IEDB☆56Updated 8 months ago
- Cancer Genome Project Insertion/Deletion detection pipeline based around Pindel☆28Updated 3 weeks ago
- 3D hotspot mutation proximity analysis tool☆47Updated 2 years ago
- MetaSRA: normalized sample-specific metadata for the Sequence Read Archive☆43Updated this week
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 3 years ago
- Predict mutated T-cell epitopes from sequencing data☆30Updated 3 months ago
- JAMM Peak Finder for Sequencing Datasets☆29Updated 5 years ago
- A bioinformatics best-practice analysis pipeline for epitope prediction and annotation☆45Updated this week
- Platform for integrating genomic analysis with Jupyter Notebooks.☆44Updated 10 months ago
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆60Updated 2 years ago
- ☆19Updated 2 years ago
- Digital Expression Explorer 2 (DEE2): a repository of uniformly processed RNA-seq data☆41Updated last week
- Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆31Updated 7 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 3 years ago
- conda recipes for genomic data☆85Updated 3 years ago
- A pipeline to rapidly detect exogenous DNA integration sites using DNA or RNA paired-end sequencing data☆12Updated 2 years ago
- Python library and scripts for retrieval and storage of genomics data in HDF5 format☆26Updated 6 years ago
- MAVE-NN: genotype-phenotype maps from multiplex assays of variant effect☆27Updated this week
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 7 years ago
- Python biomart API☆65Updated last year
- PAthway Representation and Analysis by Direct Inference on Graphical Models☆44Updated 7 years ago
- Data visualization and analysis framework focused on phenotype-molecular data integration at cohort level.☆32Updated this week
- programs and scripts, mainly python, for analyses related to nucleic or protein sequences☆24Updated 2 months ago
- Annotating principal splice isoforms☆14Updated 8 months ago
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆16Updated 7 years ago
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆36Updated 3 years ago
- Analysis for svaseq paper☆19Updated 10 years ago
- MuSiCa - Mutational Signatures in Cancer☆23Updated last year
- Automatic Packaging and Distribution of Bioinformatics Pipelines☆26Updated 7 years ago