Python-based framework for computational immunomics
☆40Jul 7, 2021Updated 4 years ago
Alternatives and similar repositories for Fred2
Users that are interested in Fred2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Personalized cancer epitope discovery and peptide vaccine prediction pipeline☆30Nov 14, 2017Updated 8 years ago
- DEPRECATED. This tool has been superseded by https://github.com/griffithlab/pVACtools☆60Apr 16, 2019Updated 7 years ago
- commandline manipulation of genomic variants and NGS reads☆19Sep 6, 2024Updated last year
- Demonstrating best practices for bioinformatics command line tools☆24Jul 23, 2020Updated 5 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆52Sep 12, 2019Updated 6 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- BigWIG, BigBED and TDF for the JVM☆13Feb 23, 2021Updated 5 years ago
- Python interface to amino acid properties and IEDB☆57Apr 8, 2026Updated 3 weeks ago
- Paired Replicate Analysis of Allelic Differential Splicing Events☆12Feb 21, 2023Updated 3 years ago
- A simple flow cytometry analyzer GUI.☆21Updated this week
- IMSEQ - IMmunogenetic SEQuence Analysis☆15Aug 10, 2018Updated 7 years ago
- Microassembly based somatic variant caller for NGS data☆154Jun 23, 2022Updated 3 years ago
- Utilities for analyzing mutations and neoepitopes in patient cohorts☆20Jun 7, 2018Updated 7 years ago
- B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction☆62Apr 25, 2026Updated last week
- Simulating virus evolution and epidemiology☆21Feb 22, 2022Updated 4 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- IgSimulator is a versatile tool for simulation of immunoglobulin repertoire☆12Nov 25, 2016Updated 9 years ago
- Telomerecat: The telomere computational analysis tool☆14Oct 9, 2020Updated 5 years ago
- Peptide-MHC I binding affinity prediction☆246Updated this week
- Bioinformatics Ketrew Pipelines☆28Nov 14, 2021Updated 4 years ago
- imNet: a Sequence Network Construction Toolkit☆20Jul 7, 2020Updated 5 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆29Oct 11, 2019Updated 6 years ago
- In-silico method written in Python and R to determine HLA genotypes of a sample. seq2HLA takes standard RNA-Seq sequence reads in fastq f…☆51Aug 9, 2025Updated 8 months ago
- Amino acid embedding and Convolutional Neural Network for HLA Class I-peptide binding prediction☆26Aug 3, 2017Updated 8 years ago
- Convert TCR gene names☆15Dec 26, 2025Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- An R package built on RMarkdown to create biosketches (e.g. for NIH)☆22Feb 25, 2022Updated 4 years ago
- Strongly typed file path and file system operations.☆26Jun 24, 2025Updated 10 months ago
- Short example showing how to calculate and plot a 2D t-SNE projection from mass cytometry data in R☆17Nov 9, 2015Updated 10 years ago
- IMGT segment library converted to RepSeq.IO JSON format☆13Mar 21, 2023Updated 3 years ago
- [Deprectated, use vdjmatch2 instead] ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆39Feb 23, 2026Updated 2 months ago
- Python interface to running command-line and web-based MHC binding predictors☆101Apr 18, 2026Updated 2 weeks ago
- Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay☆58Mar 29, 2021Updated 5 years ago
- Analyze antibody repertoires and discover new V genes from high-throughput sequencing reads☆16Dec 5, 2023Updated 2 years ago
- Highly informative TCR representation model☆16Nov 26, 2025Updated 5 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Introduction to Reproducible Publications with Quarto