FRED-2 / Fred2Links
Python-based framework for computational immunomics
☆40Updated 4 years ago
Alternatives and similar repositories for Fred2
Users that are interested in Fred2 are comparing it to the libraries listed below
Sorting:
- Library for manipulating genomic variants and predicting their effects☆85Updated last year
- Python interface to amino acid properties and IEDB☆57Updated last year
- Automatic Packaging and Distribution of Bioinformatics Pipelines☆26Updated 8 years ago
- Predict mutated T-cell epitopes from sequencing data☆30Updated 11 months ago
- Efficient handling of FASTQ files from Python☆51Updated 2 months ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆52Updated 6 years ago
- Platform for integrating genomic analysis with Jupyter Notebooks.☆44Updated 6 months ago
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆15Updated 7 years ago
- A novel management, annotation, and machine learning framework for analyzing cancer mutations☆31Updated last year
- A Feature Density Estimator for High-Throughput Sequence Tags☆22Updated 4 years ago
- Toil workflows for common genomic pipelines☆33Updated 6 years ago
- 3D hotspot mutation proximity analysis tool☆52Updated 2 years ago
- Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆31Updated 8 years ago
- paplot creates various dynamic and interactive reports for cancer genome analysis.☆26Updated 3 years ago
- Curated collection of open-source bioinformatics tools☆28Updated 7 years ago
- python access to UCSC genomes database☆136Updated 5 years ago
- Digital Expression Explorer 2 (DEE2): a repository of uniformly processed RNA-seq data☆40Updated last month
- Biological Graphic tool in Python☆34Updated 5 years ago
- Simple interface to BioMart (Python -> rpy2 -> R/BioConductor's biomaRt)☆16Updated 11 years ago
- ☆36Updated 9 months ago
- A software for the multispecies design of CRISPR/Cas9 libraries☆36Updated 3 years ago
- Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data☆87Updated 5 years ago
- Ranked vaccine peptides for personalized cancer immunotherapy☆60Updated this week
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 7 years ago
- An Artificial Neural Network-based discriminator for validating clinically significant genomic variants☆35Updated 2 years ago
- Parallel merging, squaring off and ensemble calling for genomic variants☆20Updated 6 years ago
- Scalable RNA-seq analysis☆73Updated 5 years ago
- EpiViz is a scientific information visualization tool for genetic and epigenetic data, used to aid in the exploration and understanding o…☆71Updated 2 years ago
- Data visualization and analysis framework focused on phenotype-molecular data integration at cohort level.☆48Updated this week
- ☆19Updated 3 years ago